Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120795.seq
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 30 1.3
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 30 1.3
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 2.2
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 29 2.2
Z81588-1|CAB04716.1| 281|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 29 3.9
U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon g... 29 3.9
AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein. 29 3.9
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 29 3.9
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 29 3.9
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 29 3.9
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 29 3.9
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 29 3.9
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ... 28 6.8
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 27 8.9
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 27 8.9
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 27 8.9
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 27 8.9
AF192746-1|AAF08804.1| 401|Caenorhabditis elegans synapsin prot... 27 8.9
AC006743-3|AAF60504.2| 401|Caenorhabditis elegans Synapsin prot... 27 8.9
AC006743-2|AAM97971.1| 474|Caenorhabditis elegans Synapsin prot... 27 8.9
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 155 GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSS 6
GN + C+++ + +CI LSSN+ C C Y+G C T S+
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSN 1858
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 155 GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSS 6
GN + C+++ + +CI LSSN+ C C Y+G C T S+
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSN 1858
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 595 IKLNLFTTTRDEFDESAKQTERISFASSGQARLER 491
+KLN +T E D+SA+ E+++ A+ A L+R
Sbjct: 1257 VKLNEMNSTATEKDDSARMREQLNHANETMAELKR 1291
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 595 IKLNLFTTTRDEFDESAKQTERISFASSGQARLER 491
+KLN +T E D+SA+ E+++ A+ A L+R
Sbjct: 1257 VKLNEMNSTATEKDDSARMREQLNHANETMAELKR 1291
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 595 IKLNLFTTTRDEFDESAKQTERISFASSGQARLER 491
+KLN +T E D+SA+ E+++ A+ A L+R
Sbjct: 1257 VKLNEMNSTATEKDDSARMREQLNHANETMAELKR 1291
>Z81588-1|CAB04716.1| 281|Caenorhabditis elegans Hypothetical
protein T07D10.1 protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 184 SLLQDAQATVKFNSAPVEGHFYAARRCCTPXGIC 285
++L + T K SA V+ FY RRC GIC
Sbjct: 139 TILSEFHYTYKMVSARVQATFYHNRRCTCLAGIC 172
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 38 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 127
C C+R Y T+ YSCSC P ++SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 38 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 127
C C+R Y T+ YSCSC P ++SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66
>U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon gene
protein 2 protein.
Length = 355
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 274 SAYSSVVPH-RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 134
SA +S P + GP + ++L LG G+G T V R T RKT
Sbjct: 12 SAEASEEPSPQTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59
>AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein.
Length = 355
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 274 SAYSSVVPH-RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 134
SA +S P + GP + ++L LG G+G T V R T RKT
Sbjct: 12 SAEASEEPSPQTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 158 SAPPDSRR*ACSKTPKRQ*SLIPLPSRAISMRH---DAAVRRXESVQDRPDYKLDAATGF 328
SAPP +R+ + S P R+ P P R + RH D +S + P ++ AT F
Sbjct: 571 SAPPAARQSSPSPPPARRRPQSPSPERQRTSRHADRDITSYDEDSYRAVPPPRMPTATSF 630
Query: 329 S 331
S
Sbjct: 631 S 631
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 158 SAPPDSRR*ACSKTPKRQ*SLIPLPSRAISMRH---DAAVRRXESVQDRPDYKLDAATGF 328
SAPP +R+ + S P R+ P P R + RH D +S + P ++ AT F
Sbjct: 521 SAPPAARQSSPSPPPARRRPQSPSPERQRTSRHADRDITSYDEDSYRAVPPPRMPTATSF 580
Query: 329 S 331
S
Sbjct: 581 S 581
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 158 SAPPDSRR*ACSKTPKRQ*SLIPLPSRAISMRH---DAAVRRXESVQDRPDYKLDAATGF 328
SAPP +R+ + S P R+ P P R + RH D +S + P ++ AT F
Sbjct: 571 SAPPAARQSSPSPPPARRRPQSPSPERQRTSRHADRDITSYDEDSYRAVPPPRMPTATSF 630
Query: 329 S 331
S
Sbjct: 631 S 631
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 158 SAPPDSRR*ACSKTPKRQ*SLIPLPSRAISMRH---DAAVRRXESVQDRPDYKLDAATGF 328
SAPP +R+ + S P R+ P P R + RH D +S + P ++ AT F
Sbjct: 571 SAPPAARQSSPSPPPARRRPQSPSPERQRTSRHADRDITSYDEDSYRAVPPPRMPTATSF 630
Query: 329 S 331
S
Sbjct: 631 S 631
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 38 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 127
C C+R Y +T+ YSCSC P + SC
Sbjct: 58 CSCQRTTY-TTQPQQYSCSCQNTAPVQASC 86
>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
protein F25G6.9 protein.
Length = 1373
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 201 GVLEQAQRRLSGGA-LGQHVFVKPILQLRRVGHLGAHE 91
G+L +Q+RL G L Q+VF+K L GH H+
Sbjct: 153 GLLSDSQKRLVGNCGLAQNVFLKHQPDLYPTGHESEHD 190
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 38 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 127
C C+R Y T+ YSCSC P + SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 38 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 127
C C+R Y T+ YSCSC P + SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 38 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 127
C C+R Y T+ YSCSC P + SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 38 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 127
C C+R Y T+ YSCSC P + SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66
>AF192746-1|AAF08804.1| 401|Caenorhabditis elegans synapsin
protein.
Length = 401
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 102 QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 218
+DD+R AA L+LR VAP + EP P+ S V
Sbjct: 284 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 320
>AC006743-3|AAF60504.2| 401|Caenorhabditis elegans Synapsin protein
1, isoform a protein.
Length = 401
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 102 QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 218
+DD+R AA L+LR VAP + EP P+ S V
Sbjct: 284 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 320
>AC006743-2|AAM97971.1| 474|Caenorhabditis elegans Synapsin protein
1, isoform b protein.
Length = 474
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 102 QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 218
+DD+R AA L+LR VAP + EP P+ S V
Sbjct: 357 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,462,807
Number of Sequences: 27780
Number of extensions: 290327
Number of successful extensions: 923
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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