Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120795.seq
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13130.1 68418.m01504 hypothetical protein low similarity to ...    29   2.7  
At1g63420.1 68414.m07172 expressed protein                             29   3.6  
At2g41720.1 68415.m05157 pentatricopeptide (PPR) repeat-containi...    27   8.4  

>At5g13130.1 68418.m01504 hypothetical protein low similarity to
           microrchidia [Mus musculus] GI:5410255
          Length = 706

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 355 DQMRYVLQTEPTVHHTLLEKLMKQELRPYR 444
           D  R +L+ E   HH++L+ +MK E + Y+
Sbjct: 365 DNFRIILRGEDVEHHSVLDDMMKIEEKTYK 394


>At1g63420.1 68414.m07172 expressed protein
          Length = 578

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 99  LQDDQRGGAAKLVLRTRVAPVHRPTV-GVEPAPRRPSDSK 215
           L  ++ G  ++  L  +  P HRPT+  ++P P R S+ K
Sbjct: 89  LNQNRSGSCSRTPLLNKKKPSHRPTITTIKPVPVRVSEKK 128


>At2g41720.1 68415.m05157 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 822

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 319 DWFL*IAAAPNDDQMRYVLQTEPTVHHTLLEKLMKQELRPYRNSGRGLLHGFR 477
           +W       P++   R ++           E L++Q+L   RN G GL+  FR
Sbjct: 764 EWMSGAGIQPSNQMYRDIISFGERSAGIEFEPLIRQKLESLRNKGEGLIPTFR 816


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,537,522
Number of Sequences: 28952
Number of extensions: 263483
Number of successful extensions: 661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)