Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120794.seq
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    30   0.26 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   5.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   9.7  

>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 19/50 (38%), Positives = 20/50 (40%)
 Frame = +2

Query: 293 NNSLRAKLELGRAVHYTLRCRCVTGTRRRSQQNNCGRRHVRPRLDRRNKL 442
           N  LR  L L    H   RC  VT    R   N C   H  P L +RN L
Sbjct: 3   NTGLRKGLALSPITHLLKRCSSVTDNVHRV--NYCYNYHTVPNLSQRNLL 50


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 235 IFLMTYDLKGLGQTRIWATKQQSTRQVGTRKSCTLHI 345
           IFL   D +  G TRI  +K  +T Q   R + T H+
Sbjct: 877 IFLTNLDYRLEGHTRIIFSKALNTGQQAVRLTATKHL 913


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 654 FLNTEVERCQNGNQNRLLLLIENVRRLSGAVKRVHIIVEIFLNL 523
           FL  +VE C+NG+ +R L     + RL    +   I+VE+ L L
Sbjct: 639 FLYMQVELCENGSLDRFLEEQGQLSRLD-EFRVWKILVEVALGL 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,155
Number of Sequences: 5004
Number of extensions: 51745
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)