Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120794.seq
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       39   0.003
08_02_1114 - 24388807-24388932,24390941-24390970,24391044-243911...    29   2.5  
12_02_0419 + 18916995-18917090,18917703-18917851,18917873-189180...    29   4.3  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 294 TTVYAPSWNSEELYTTHYAVDALLEQGVDPNKIIVGVAMYGRGW 425
           T   AP ++    Y+  Y V + L+ GV  +K+++G+ +YGR W
Sbjct: 246 TAFDAPLYDRASHYSASYGVVSWLDAGVPASKVVMGIPLYGRSW 289


>08_02_1114 -
           24388807-24388932,24390941-24390970,24391044-24391100,
           24391231-24391393,24391487-24391614,24391697-24391802,
           24391912-24391991,24392118-24392215,24392491-24392631,
           24392738-24392822,24393556-24393693
          Length = 383

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 324 EELYTTHYAVDALLEQGVDPNKIIVGVAM-YGRGWTGVTNYTNGNYFSGTXNGPVSGTWE 500
           ++ +T     DAL   G++ + +IVG+       WTG  ++ N +  S    G +S  +E
Sbjct: 39  DDYHTLEQVTDALAHAGLESSNLIVGIDFTKSNEWTGRVSFNNQSLHS---LGHISNPYE 95

Query: 501 DGV 509
             +
Sbjct: 96  QAI 98


>12_02_0419 +
           18916995-18917090,18917703-18917851,18917873-18918063,
           18918178-18918269,18918456-18918550,18918920-18919049,
           18919178-18919219
          Length = 264

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 91  CCWMSCAKC*TTSKCKPAGFTN*QAL*ARRYDKIAVVNYAEAQKSLDKI 237
           C  +S  KC   SK  P GFT+   L A+R   + ++      + LDKI
Sbjct: 98  CEVLSVHKCLAASKLVPLGFTSASQLHAQR---LEIIQVTTGSRELDKI 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,737,442
Number of Sequences: 37544
Number of extensions: 373257
Number of successful extensions: 996
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)