Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120794.seq
(659 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 33 0.16
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 33 0.21
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 31 0.83
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 31 1.1
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41) 30 1.9
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_46513| Best HMM Match : BioW (HMM E-Value=6) 29 2.5
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 29 3.4
SB_3761| Best HMM Match : Tom22 (HMM E-Value=0.14) 29 4.4
SB_52302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 28 7.7
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = +3
Query: 237 ISHDLRFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAVDALLEQGVDPNKIIVGVAMYG 416
+S+DL G W +T G+ + S + L TH AVD + G+ NKI +G+ +YG
Sbjct: 210 MSYDLH--GDWEDTT-GHHAAM--DSSTGDPLTVTH-AVDLWIAGGMPSNKIALGIPLYG 263
Query: 417 RGWT 428
R +T
Sbjct: 264 RSFT 267
Score = 33.1 bits (72), Expect = 0.21
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 1 DGVDVDWEFPGGKGANP 51
DG+D+DWE+PG +G+ P
Sbjct: 133 DGLDLDWEYPGARGSPP 149
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 33.5 bits (73), Expect = 0.16
Identities = 26/88 (29%), Positives = 37/88 (42%)
Frame = +1
Query: 1 DGVDVDWEFPGGKGANPSLGDAEVTPKHTFCCWMSCAKC*TTSKCKPAGFTN*QAL*ARR 180
DG+D+DWE+PG +G +P T C + A A+ A
Sbjct: 136 DGLDLDWEYPGMRGGSPKSDKGRFT---LLCRELREAFEAEAKASGKERMLLTAAVAAGL 192
Query: 181 YDKIAVVNYAEAQKSLDKIFLMTYDLKG 264
+ + A+ + LD I LMTYDL G
Sbjct: 193 WTIKGAYDIADIAEPLDWINLMTYDLHG 220
Score = 32.7 bits (71), Expect = 0.27
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 1 DGVDVDWEFPGGKGANP 51
DG+D+DWE+PG +G +P
Sbjct: 521 DGLDLDWEYPGMRGGSP 537
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 33.1 bits (72), Expect = 0.21
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 1 DGVDVDWEFPGGKGANP 51
DG+D+DWE+PG +G+ P
Sbjct: 57 DGLDLDWEYPGARGSPP 73
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 31.1 bits (67), Expect = 0.83
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +1
Query: 1 DGVDVDWEFPGGK-GANPSLGDAEVTPKHTFCC--WMSCAKC*TTSKCKP-AGFTN*QAL 168
DG D+DWE+PG + G++P GD + + T C + K +P T A
Sbjct: 245 DGFDLDWEYPGNRVGSDP--GDKQ---RFTILCQELLDAFKLEAAQTNRPRLLLTAAVAA 299
Query: 169 *ARRYDKIAVVNYAEAQKSLDKIFLMTYDLKGL 267
DK V+ + + LD I LM YDL+G+
Sbjct: 300 GKATIDKAYEVD--KIGQILDLINLMAYDLRGM 330
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 1 DGVDVDWEFPGGKGANP 51
DG+D+DWE+P +G +P
Sbjct: 133 DGLDLDWEYPATRGGSP 149
>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
Length = 1515
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 208 AEAQKSLDKI--FLMTYDLKGLGQTRIWATKQQSTRQVGTRKSCTLHITLSMRYWN 369
A+A+ ++ +I FL+T + K +G K+ TR + K+CTLH L R N
Sbjct: 476 ADAKVAVQRIERFLVTTNDKPIGTQTPRFRKRSLTRWISPNKTCTLHNNLFKRNKN 531
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 1 DGVDVDWEFPGGKGANP 51
DG D+DWE+P +G +P
Sbjct: 514 DGFDLDWEYPASRGNSP 530
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +3
Query: 156 LTSAISAALRQ-DCRGKLRRSAKVIR--QNISHDLRFKGAWSNTDLGYQTTVYAPSWNSE 326
LT+A+SA D ++ + A ++ +++DL G W G+ T + P +
Sbjct: 562 LTAAVSAGHGTVDAAYEVHKLAGILDWINLMTYDLH--GPWEPYT-GHHTALVGPPGDK- 617
Query: 327 ELYTTHYAVDALLEQGVDPNKIIVGVAMYGRGW 425
T YAV +E+G+ KI +G+A YG +
Sbjct: 618 --LTVSYAVKYWMEKGMPCGKIALGMANYGHAF 648
>SB_46513| Best HMM Match : BioW (HMM E-Value=6)
Length = 216
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 263 GLVKHGFGLPNNSLRAKLELGRAVHYTLRCR--CVTGTRRRSQQNNCGRRHVR 415
GLV L ++L K+++ +R R C TGTR SQ N G +++
Sbjct: 137 GLVSKSVSLNASALSTKMKINGEHSDIIRSRDDCTTGTRSDSQLKNRGENNIK 189
>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 293 NNSLRAKLELGRAVHYTLRCRCVTGTRRRSQQNNCGRRHVRPRLDRRNKLYEWQLFF 463
+NSL + H R C T + RS+ NC R+H D + L +Q+ F
Sbjct: 491 DNSLGKTRYRSQYKHTRRRHPCSTCEQYRSRNRNCARKHPYRSADAKKVLKNFQINF 547
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 187 KIAVVNYAEAQKSLDKIFLMTYDLKGLGQTRIWATKQQSTRQVGTRKSCTLHI---TLSM 357
K VVN ++ K + Y LK + TR+W +Q+ K+ L + LSM
Sbjct: 1391 KNKVVNMTRHAINMTKTYARVYQLKAMNMTRVW-------KQIALNKTTILRMRVYKLSM 1443
Query: 358 RYWNKA 375
++N++
Sbjct: 1444 AFYNRS 1449
>SB_3761| Best HMM Match : Tom22 (HMM E-Value=0.14)
Length = 109
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 110 AQLIQQQNVCFGVTSASPSDGLAPLPPG 27
AQL QQ+ + G ++AS G+ +PPG
Sbjct: 76 AQLQQQRQILLGPSAASGGGGIGGVPPG 103
>SB_52302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 116 HFAQLIQQQNVCFGVTSASPSDGLAPLPPGNSQSTSTP 3
HF + N+CF S SP D L P S+++P
Sbjct: 3 HFTDTLISANICFTSNSCSPGDPLVLERPPPRWSSNSP 40
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 315 WNSEELYTTHYAVDALLEQGVDPNKIIVG 401
W S+E AVD +++ VDP++ +VG
Sbjct: 1474 WGSQESAMDSIAVDLVMDSQVDPDEQVVG 1502
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,347,635
Number of Sequences: 59808
Number of extensions: 413652
Number of successful extensions: 1098
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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