Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120794.seq
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    36   0.019
Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    35   0.045
AF077534-5|AAN60512.1|  102|Caenorhabditis elegans Hypothetical ...    29   2.2  
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U28737-9|AAA68276.1|  345|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    28   6.8  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      28   6.8  
AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.    28   6.8  

>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = +3

Query: 255 FKGAWSNTDLGYQTTVYAPS-----WNSEELYTTHYAVDALLEQGVDPNKIIVGVAMYGR 419
           F GAW++  +G+ + +YA +     WN    +    +     ++G+   KIIVG+  YGR
Sbjct: 249 FFGAWASL-VGFNSPLYATTELPAEWNG---WNVDSSARYWNQKGMPKEKIIVGMPTYGR 304

Query: 420 GWT 428
           GWT
Sbjct: 305 GWT 307



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 1   DGVDVDWEFPGG 36
           DG+D+DWE+P G
Sbjct: 172 DGIDIDWEYPSG 183


>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +3

Query: 243 HDLRFKGAWSNTDLGYQTTVYAP---SWNSEELYTTHYAVDALLEQGVDPNKIIVGVAMY 413
           H + F G W+N   G  T   AP    + + + +  H+ +   +E+  DP+K+ + +  Y
Sbjct: 233 HSMDFAGPWAN-QYGVPTGPSAPMCGGFGARKNFNVHHTMKYYVEKIEDPSKLNLVIPFY 291

Query: 414 GRGWTGVTNYTNGN 455
            R W  V    + N
Sbjct: 292 ARRWEHVKESLDSN 305


>AF077534-5|AAN60512.1|  102|Caenorhabditis elegans Hypothetical
           protein K07D4.9 protein.
          Length = 102

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 284 GLPNNSLRAKLELGRAVHYTLRCRCVTGTRRRSQQNN 394
           GL   + R +LE+G +     RCRC  GT  + QQ +
Sbjct: 57  GLLQGTRRKRLEVGNSFSKGGRCRCTDGTCTQFQQRS 93


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
            T01C4.1 protein.
          Length = 1484

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 1    DGVDVDWEFPGGKGAN 48
            DGVD+DWE+P  KG +
Sbjct: 1072 DGVDLDWEYPEMKGGD 1087


>U28737-9|AAA68276.1|  345|Caenorhabditis elegans Hypothetical
           protein F14B8.6 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 10  DVDWEFPGGKGANPSLGDAEVTPKHTF 90
           D DW  P    AN  L DA++TP H +
Sbjct: 265 DGDWIVPKTPKANHELYDADITPHHQY 291


>Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical
           protein T13H5.3 protein.
          Length = 626

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 1   DGVDVDWEFPGGKGA 45
           DGVD+DWE+P   GA
Sbjct: 136 DGVDIDWEYPVTGGA 150


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 1    DGVDVDWEFPGGKG 42
            DGVD+DWE+P   G
Sbjct: 1609 DGVDLDWEYPDSNG 1622


>Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical
           protein C02C6.1b protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 338 YTLRCRCVTGTRRRSQQNNCGRRHVRPRLDRRNKLYEWQLFFRH-XQRAGVGHV 496
           +TLR R   G   R Q++  GR+ +R  LD   K +     +RH   R G  ++
Sbjct: 227 FTLR-RGYVGVVNRGQKDIVGRKDIRAALDAERKFFISHPSYRHMADRLGTSYL 279


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 338 YTLRCRCVTGTRRRSQQNNCGRRHVRPRLDRRNKLYEWQLFFRH-XQRAGVGHV 496
           +TLR R   G   R Q++  GR+ +R  LD   K +     +RH   R G  ++
Sbjct: 227 FTLR-RGYVGVVNRGQKDIVGRKDIRAALDAERKFFISHPSYRHMADRLGTSYL 279


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 338 YTLRCRCVTGTRRRSQQNNCGRRHVRPRLDRRNKLYEWQLFFRH-XQRAGVGHV 496
           +TLR R   G   R Q++  GR+ +R  LD   K +     +RH   R G  ++
Sbjct: 227 FTLR-RGYVGVVNRGQKDIVGRKDIRAALDAERKFFISHPSYRHMADRLGTSYL 279


>AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 338 YTLRCRCVTGTRRRSQQNNCGRRHVRPRLDRRNKLYEWQLFFRH-XQRAGVGHV 496
           +TLR R   G   R Q++  GR+ +R  LD   K +     +RH   R G  ++
Sbjct: 227 FTLR-RGYVGVVNRGQKDIVGRKDIRAALDAERKFFISHPSYRHMADRLGTSYL 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,512
Number of Sequences: 27780
Number of extensions: 301447
Number of successful extensions: 729
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)