Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120794.seq
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68160.1 68414.m07786 expressed protein                             31   0.90 
At4g22010.1 68417.m03185 multi-copper oxidase type I family prot...    29   3.6  
At1g55980.1 68414.m06421 expressed protein                             29   3.6  
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    28   4.8  
At4g12750.1 68417.m02002 expressed protein                             28   4.8  
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR...    28   6.3  

>At1g68160.1 68414.m07786 expressed protein
          Length = 273

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 344 LRCRCVTGTRRRSQQNNCGRR 406
           LRCR +   RR+S++ NCGRR
Sbjct: 121 LRCRWLRRKRRKSEELNCGRR 141


>At4g22010.1 68417.m03185 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 541

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 336 TTHYAVDALLEQGVD-PNKIIVGVAMYGRGWTGVT 437
           T HY +  LLE G + PN    GV + GRGW G T
Sbjct: 169 TNHYVLRRLLEAGRNLPNPD--GVLINGRGWGGNT 201


>At1g55980.1 68414.m06421 expressed protein
          Length = 464

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 22  EFPGGKGANPSLGDAEVTPKHTFCCWMSCAKC*TTSKCKPAGFTN*QAL*ARRYDKIAV 198
           E   G+  NP+    EV P++ F C +  AK     +CKP   T       ++   +AV
Sbjct: 101 EVSTGEATNPASDPHEVEPENAFRCKLHKAK--AQKECKPMAATTISPAIRKQMSSVAV 157


>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 25/93 (26%), Positives = 35/93 (37%)
 Frame = +1

Query: 4   GVDVDWEFPGGKGANPSLGDAEVTPKHTFCCWMSCAKC*TTSKCKPAGFTN*QAL*ARRY 183
           G+D+DWE+P       + G            W S      +S  KP          +  Y
Sbjct: 134 GLDLDWEYPSSATEMTNFGTLLRE-------WRSAVVAEASSSGKPRLLLAAAVFYSNNY 186

Query: 184 DKIAVVNYAEAQKSLDKIFLMTYDLKGLGQTRI 282
             +     A A  SLD + LM YD  G G +R+
Sbjct: 187 YSVLYPVSAVAS-SLDWVNLMAYDFYGPGWSRV 218


>At4g12750.1 68417.m02002 expressed protein 
          Length = 1108

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 287 LPNNSLRAKLELGRAVHYTLRCRCVTGTRRRSQQNNCGRRHVRPRLDRRN 436
           L + SL       R V   +  RC+ GTR+ S QN     H+  ++ R++
Sbjct: 44  LYDRSLMRSSTSSRCVGVAVEERCIVGTRKASCQNLLPSSHILAKVFRKD 93


>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1226

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 1    DGVDVDWEFPGGKGANPSLGDAEVTPKHTFCCWMSCAK 114
            +G  +++ FP G+ +N     A +  +H F  ++SC+K
Sbjct: 1028 EGSWIEFSFPVGRWSNQGNIVANIASEHVFIGYISCSK 1065


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,783,831
Number of Sequences: 28952
Number of extensions: 275052
Number of successful extensions: 717
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)