Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120793.seq
         (642 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7SJ37 Cluster: Predicted protein; n=1; Nematostella ve...    35   1.9  
UniRef50_UPI00006CF850 Cluster: hypothetical protein TTHERM_0054...    33   5.9  

>UniRef50_A7SJ37 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 796

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +3

Query: 138 NSTCKT*SRDDVICFSKLNWLYE*NSTCKTQSRDDVICFSKLNWLYE*NSTCKTQLSDDV 317
           +STC+    DDV    +++ + +  STC+    DDV    +++ L + +STC+    DDV
Sbjct: 512 HSTCRVHPLDDVHSTCRVHPIDDVRSTCRVHPIDDVRSACRVHPLDDVHSTCRVHPLDDV 571



 Score = 33.9 bits (74), Expect = 3.4
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +3

Query: 141 STCKT*SRDDVICFSKLNWLYE*NSTCKTQSRDDVICFSKLNWLYE*NSTCKTQLSDD 314
           STC+    DDV    +++ L + +STC+    DDV    +++ L + +STC+    DD
Sbjct: 537 STCRVHPIDDVRSACRVHPLDDVHSTCRVHPLDDVRSACRVHPLDDVHSTCRVHPIDD 594


>UniRef50_UPI00006CF850 Cluster: hypothetical protein
           TTHERM_00549460; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00549460 - Tetrahymena
           thermophila SB210
          Length = 281

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
 Frame = -2

Query: 311 IRQLCFTSRILLVKPVQF*KTNDIIS*LCFTRRILLVKPVQF*KTNDIISRLCFTSRILL 132
           I   C+ ++++  K V   +   +IS +C T   +++KP+   ++  I+   C  S   +
Sbjct: 135 IEMCCYKTQLIRYKGVVIGRIERLISGICSTSNRVIIKPINAQRSPIILVPRCSFS-YCI 193

Query: 131 VKRV*KFCDVNET-----TCSIFYNI*VKHYDFQQFCGCRYVC 18
            K   K+C    T       +I   I   HY+  + C C ++C
Sbjct: 194 RKNPSKYCKYPITIDIMRNGNIISEITNSHYEEPKCCCCSFLC 236


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,572,495
Number of Sequences: 1657284
Number of extensions: 10910595
Number of successful extensions: 17112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17092
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)