Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120793.seq
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   6.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 398 TRKASLIRPVCKT*HHNKSCL*SCAKYD 315
           T  A  +   CK  ++ K C  +CA+ D
Sbjct: 778 TCDAKYLEIKCKRIYNEKQCCKNCARVD 805


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 500 PSKYPIXASP*NIHAYNCVQXXTXRSIV 417
           P +YP  A   N  A+N V   T  S++
Sbjct: 292 PERYPPLAQGVNDDAFNSVATPTPTSVM 319


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 54  IMFHLNIVKNTTRCFIDVTKFLNSLYK 134
           IMFH+N   N     I  +KF +  +K
Sbjct: 340 IMFHINSAVNPILYNIISSKFRSGFFK 366


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,688
Number of Sequences: 336
Number of extensions: 3311
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)