Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120793.seq
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_59636| Best HMM Match : Ins_element1 (HMM E-Value=4.6)              30   1.8  
SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)                  29   2.4  
SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)          27   9.8  

>SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 607 RPGIPX-WXWACPVFKGQMYPHV*QRLLNCALYXPYSPQNIPYXH 476
           R G P  W W  P   G + P   Q +LN  L   Y  Q+ P+ H
Sbjct: 139 RGGCPGDWVWVVPPLSGSVSPVFHQEMLNYMLKPSYEYQDDPWKH 183


>SB_59636| Best HMM Match : Ins_element1 (HMM E-Value=4.6)
          Length = 194

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 159 SRDDVICFSKLNWLYE*NSTCKTQSRDD-VICFSKLNWLYE*NSTCKTQLSDDVIFC 326
           S D+V C  KL   ++ N TCK  + DD V C  KL   ++ N TCK   SDD + C
Sbjct: 5   SHDNVTC--KLMASHD-NVTCKYMTSDDNVTC--KLMASHD-NVTCKYMTSDDNVTC 55


>SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 271 SQFSFEKQMTSSLDCVLHVEFYS*SQFSFEKQMTSSLDYVLQVEFYL*SEFKNFVTSMK 95
           SQ    + +  SLDC L+  F S S  S ++   S    VL     + ++ KN +T +K
Sbjct: 590 SQAFLTRYLKKSLDCCLYNSFSSLSSDSLDQSALSQEPQVLSTNVKINNKNKNKLTKLK 648


>SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)
          Length = 184

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 174 ICFSKLNWLYE*NSTCKTQSRDDV---ICFSKLNWLYE*NSTCKTQLS 308
           IC   + WLY     C+  SR ++   IC   + WL+     C+ + S
Sbjct: 28  ICQFSVRWLYAFKRVCRFVSRQNLSVAICQCSVRWLFAVKRVCRIRQS 75



 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
 Frame = +3

Query: 126 LYK*NSTCKT*SRDDV---ICFSKLNWLYE*NSTCKT------QSRDDVICFSKLNWLYE 278
           LY     C+  SR ++   IC   + WL+     C+       Q+    IC S + WLY 
Sbjct: 36  LYAFKRVCRFVSRQNLSVAICQCSVRWLFAVKRVCRIRQSTGRQNLSVAICQSSVRWLYA 95

Query: 279 *NSTCK 296
               C+
Sbjct: 96  FKRVCR 101


>SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 688

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 220 VKHNQEMMSFVFQN*TGFTSRILLVKHNCRMMSYFAHDYKHD 345
           VKH  E  S V+ + + F   ++LVK+NC   +   HD ++D
Sbjct: 593 VKHKLE--SGVYDDYSAFHDDMMLVKNNCFCYNPQGHDVRND 632


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = -1

Query: 294 YK*NSTRKASSVLKNK*HHLLIVFYT*NSTRKASSVLKNK*HHLSIMFYK*NSTCKAS 121
           YK +S  K+S + K+   +     Y  +S  K+SS+ K+   + S   YK +S CK+S
Sbjct: 698 YKSSSLYKSSPLHKSSPLYKSSPLYKSSSLYKSSSLYKSSALYKSSPLYKCSSLCKSS 755


>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
          Length = 1515

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 331 DYKHDLL*CHVLHTGLIKLALRVKF 405
           D KHD L C   H   IK AL+VKF
Sbjct: 58  DVKHDSLLCQRQHHPEIKPALKVKF 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,601,880
Number of Sequences: 59808
Number of extensions: 396497
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)