Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120793.seq
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 617 AGFXTRXTPLXMGLPGIQRPNVPPCLA 537
           A   T  TPL +  PG+     PP LA
Sbjct: 313 AALATEHTPLSVKFPGMGHGLQPPDLA 339


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 192 NWLYE*NSTCKTQSRDDVICFSKLN 266
           NW+ + NS     +R+ + CF  +N
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMN 569


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 192 NWLYE*NSTCKTQSRDDVICFSKLN 266
           NW+ + NS     +R+ + CF  +N
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMN 569


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 301 NCRMMSYFAHDYKH 342
           N    SYF +DYKH
Sbjct: 660 NIEGTSYFLNDYKH 673


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,055
Number of Sequences: 438
Number of extensions: 3300
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)