Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120792.seq
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    28   1.0  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    27   1.8  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   1.8  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   2.3  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   4.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   5.4  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   5.4  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   7.1  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.4  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    25   9.4  

>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +1

Query: 79  VPDGYSRLSCGRTNQRVGVH*QDYEHAIDKTRSHDV*HFGSYTKRYAQEQRFAR--QNKI 252
           +P G  + S  R   RVG   Q+ +  + KT  +D  +    T+R+  E  F      + 
Sbjct: 214 MPSGNQQPSLTRLKDRVGYVHQEIKIDLTKTTQNDPVY--DTTERHELEVEFGNIADLRD 271

Query: 253 KVDEQFDQLEREYSDKIDGFHDNIQYFKDEH 345
           +  +  D +E     ++  F DN++  + EH
Sbjct: 272 RAQKAKDGMEAPLFRRVQLFMDNVRILRREH 302


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 181 HENGFCQLRVHN--LVNVHQLSGLFVHMTISNNRLGHVDFYRKNYTHFA 41
           HENG   L      +V+VH  SGLF + TI   R+  V  Y  ++T  A
Sbjct: 149 HENGVLSLPFSGSAVVDVHNSSGLFSNDTIPEERI--VLIYTDHWTGVA 195


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 268 FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKS 384
           FD+   E  + + GFHD   YF  +   +  QN ++ KS
Sbjct: 17  FDEANDEAYESV-GFHDYADYFSRKQRKLQNQNAALYKS 54


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 244 NKIKVDE-QFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYT 420
           N+ K+++ +F + E+   +KI+G    I   + E  S+  Q  SVL ++  + L+     
Sbjct: 737 NEAKIEQAKFKRDEQLLVEKIEGIKKRILLKRREVNSLESQELSVLDTEKIQTLERRISE 796

Query: 421 DKKSIETY 444
            +K +E+Y
Sbjct: 797 TEKELESY 804


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/78 (20%), Positives = 38/78 (48%)
 Frame = +1

Query: 256  VDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSI 435
            +D+Q  ++ R+Y      +  +++   +  Y V+  +G+ +      +  S   +D+K +
Sbjct: 877  IDDQLIEVARDYHPL---WATSVEILSERKYFVTEADGNAVILLRDNV--SPQLSDRKKL 931

Query: 436  ETYEKYCLPQLVGKHNDC 489
              Y+K+ L +L+ K   C
Sbjct: 932  RWYKKFYLGELINKTRHC 949


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 313 HDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKY 453
           H N    K  + S SC+   V  SK + I    D  DKK  +    Y
Sbjct: 76  HGNSGSQKTHNVSFSCEIRKVKSSKLSPISNMEDSEDKKEEDESSSY 122


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 247 KIKVDEQFDQLEREYSDKIDGFHDNI 324
           ++K D  ++ LEREY    D F +++
Sbjct: 287 QLKKDPNYESLEREYQKACDDFENSL 312


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +2

Query: 431  LLKLTKNTVCPNWSANTTTATWRYACEAGX*ERQXPSGXLLSTTRLVXKVIVPFAHEINX 610
            L   +K T   + S   T  T + AC AG  +    +  +LSTT L    ++ F +++  
Sbjct: 921  LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTK 980

Query: 611  TGTFTE 628
             G   +
Sbjct: 981  QGKINQ 986


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 217 AQEQRFARQNKIKVDEQFDQLEREYSDKIDGFHD 318
           ++++ FARQ  +   E+ ++ + E SD  D F D
Sbjct: 380 SEDEEFARQQLLSRKEEEEEEDEEASDFEDSFAD 413


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = -1

Query: 211 ASY--RTRNVKHHENGF 167
           ASY  +T NVKHHEN F
Sbjct: 30  ASYCPQTINVKHHENSF 46


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 451  IFRKFQ*TFYRYNHDFLKF*QTCFSTRCHFGNLPNSVH 338
            IF K+  + +    DF++F + CF +R   GNL   +H
Sbjct: 2524 IFIKYTTSSFFLTDDFVRFIRVCFHSRIS-GNLLTLLH 2560


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 492 RGGMRVKPGFENGSXQV 542
           R G R+KPGFE G   +
Sbjct: 39  RRGRRIKPGFEGGQTPI 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,772
Number of Sequences: 5004
Number of extensions: 50457
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)