Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120792.seq
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0741 - 22690452-22690528,22690693-22690813,22690871-226909...    28   5.6  
03_02_0206 + 6402526-6403933,6405018-6405637                           28   7.4  
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450...    28   7.4  

>12_02_0741 -
           22690452-22690528,22690693-22690813,22690871-22690951,
           22691048-22691096,22691324-22691409,22691494-22691571,
           22691647-22691796,22691884-22691922,22692194-22692283,
           22692568-22692630,22692722-22692791,22693109-22693155,
           22693268-22693330,22693411-22693461,22693702-22693785,
           22693932-22693996,22694322-22694378,22694452-22694569,
           22694664-22694714,22694789-22694875,22694956-22695035,
           22695962-22696127
          Length = 590

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 229 VVLARNASYRTRNVKHHENGFCQLRVHNLVNVHQLSGLFVHMTISNNRLGH 77
           ++  R+A     +VK   + FC + V N++N+H +  L+    I  N+  H
Sbjct: 229 LLACRSAQPLIGSVKEKLSQFCHVPVENILNIHDVPNLWHVPLILRNQKVH 279


>03_02_0206 + 6402526-6403933,6405018-6405637
          Length = 675

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 422 IKSLLKLTKNTVCPNWSANTTTATWR-YACEAG-X*ERQXPSGXLLST 559
           +++L      +  P+W+++T T  W+   CE+G   E + P   L+ T
Sbjct: 35  LQALRSAVGKSALPSWNSSTPTCNWQGVTCESGRVTELRLPGAGLMGT 82


>03_01_0612 -
           4501595-4501619,4501752-4501906,4502051-4502092,
           4502238-4502279,4502365-4502464,4502825-4502889,
           4503140-4503217
          Length = 168

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 319 NIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEK 450
           N++  ++   S+    GSVLK+K  KIL   D  ++K ++  E+
Sbjct: 59  NVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEE 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,502,052
Number of Sequences: 37544
Number of extensions: 297839
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)