Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120792.seq
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21206| Best HMM Match : PaREP8 (HMM E-Value=2.4)                    34   0.11 
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)                31   0.61 
SB_56765| Best HMM Match : IWS1_C (HMM E-Value=3.9)                    29   2.5  
SB_44299| Best HMM Match : IWS1_C (HMM E-Value=3.9)                    29   2.5  
SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)                   29   2.5  
SB_47506| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)                  29   2.5  
SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48)                      29   3.3  
SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)                        29   4.3  
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.7  
SB_44341| Best HMM Match : Paramecium_SA (HMM E-Value=1.5)             27   9.9  
SB_49155| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_39764| Best HMM Match : YscO (HMM E-Value=1.5)                      27   9.9  

>SB_21206| Best HMM Match : PaREP8 (HMM E-Value=2.4)
          Length = 589

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 259 DEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILK--SHDYT 420
           DE+  Q ++  S+ ID    N+Q+     + + C  G+++K+   K +K  SHD++
Sbjct: 62  DEELQQHKKNASEHIDPESQNLQFKCQSEHEILCMWGNIVKNPRLKCVKFDSHDFS 117


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +1

Query: 220  QEQRFARQNKIKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVS-CQNGSVLKSKFAK 396
            Q  R   Q++  V   +++L+R+ S K    HD  +++K  + +V  C        +   
Sbjct: 1186 QTARSVEQHEKYVLSLWEELKRKTSRKRRKLHDAYEFYKLGNTAVLLCAELGNSVDEVEF 1245

Query: 397  ILKSHDYTDKKSIETYEKYCLPQLVGK 477
            +LK H+ T+K  +   EK    Q++GK
Sbjct: 1246 LLKKHENTEKLVLSQEEKLSALQVLGK 1272


>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
          Length = 1709

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 337 DEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKYCLPQL 468
           D H+S++CQ+ + + +K       HD+    S+ T  ++C P L
Sbjct: 9   DRHHSLTCQSNAEVITKSYPGPSIHDFVTNTSLATIMQHCAPLL 52


>SB_56765| Best HMM Match : IWS1_C (HMM E-Value=3.9)
          Length = 330

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
 Frame = +1

Query: 55  NFSGRNRRVPDGYSRLSCGRTNQRVGVH*QDYEHAIDKTRSHDV*H--FGSYTKRYAQEQ 228
           N  G  RR+    SR    R       H       ++    H   +   G    +  ++Q
Sbjct: 209 NRRGSERRISRSGSRDDIRRARNATAFHTSSVITCVEDELCHVKGNKKMGQDETQIREKQ 268

Query: 229 RFARQNKIKVDEQ-FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSK 387
           + + +  I ++E  ++++ R  S   +G  DNI+  K EH+        V++S+
Sbjct: 269 KESAKTVISIEENNYNEINRPDSQNSNGTRDNIEKDKFEHFDERLVAAVVMQSR 322


>SB_44299| Best HMM Match : IWS1_C (HMM E-Value=3.9)
          Length = 454

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
 Frame = +1

Query: 55  NFSGRNRRVPDGYSRLSCGRTNQRVGVH*QDYEHAIDKTRSHDV*H--FGSYTKRYAQEQ 228
           N  G  RR+    SR    R       H       ++    H   +   G    +  ++Q
Sbjct: 209 NRRGSERRISRSGSRDDIRRARNATAFHTSSVITCVEDELCHVKGNKKMGQDETQIREKQ 268

Query: 229 RFARQNKIKVDEQ-FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSK 387
           + + +  I ++E  ++++ R  S   +G  DNI+  K EH+        V++S+
Sbjct: 269 KESAKTVISIEENNYNEINRPDSQNSNGTRDNIEKDKFEHFDERLVAAVVMQSR 322


>SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)
          Length = 208

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 171 GFVNCVFIILLMYTNSLVCSST*QSRITVWD 79
           G VNCV+ I       L+CS +  S + VWD
Sbjct: 99  GHVNCVYQIAWSADCRLICSGSADSTLKVWD 129


>SB_47506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/93 (20%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
 Frame = +1

Query: 220 QEQRFARQNKIKVDEQFDQLEREYSDK----IDGFHDNIQYFKDEHYSVSCQNGSVLKSK 387
           QE+    ++K ++++Q  QL+RE+S++    +D  +  +++ +DE+ + S      +++ 
Sbjct: 29  QEENLVSKSKSQLEQQRLQLQREHSNEMEKMLDKTNSRLKHMEDEYATRSATAQETVRTL 88

Query: 388 FAKILKSHDYTDKKSIETYEKYCLPQLVGKHND 486
             +I K  +   +  + + +K  +  +  KHN+
Sbjct: 89  EGEIKKLKEENLRMRLSSEKK--IGSVSEKHNE 119


>SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)
          Length = 1155

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 585 TITLXTNRVVLKRXPLGXCRSQXPASH 505
           TITL +NR+VL+    G CR    + H
Sbjct: 543 TITLSSNRIVLENNNTGICREDDDSEH 569


>SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48)
          Length = 334

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 235 ARQN-KIKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQN 366
           AR++ K+KV +    LEREY D  + F+D +   +D H ++  Q+
Sbjct: 233 ARESLKLKVRDSTLWLEREYMDSFERFNDKLPAKEDFHSTMYDQH 277


>SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = -1

Query: 238 AQIVVLARNASYRTRNVKHHENGFCQLRVHNLVNVHQLSGLFVHMTISNNRLGHVDFYRK 59
           + ++++    S+ T + K  E+    L+  N  +V    G + H+T+  N+  H+   + 
Sbjct: 143 SHVIIIKGRYSHVTMS-KGRESHVTMLKGRNS-HVTMRKGRYSHVTMMKNKDNHLTMRKG 200

Query: 58  NYTHFAMVK 32
            Y+H  M+K
Sbjct: 201 RYSHVTMMK 209


>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 2590

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 199 SYTKRYAQEQRFARQNKIKVDEQF--DQLEREYSDKIDGFHDNIQYFKDEHYSVSCQN 366
           S T  +   ++  RQ  ++   +   D+  RE+S+++    DN+  FK+E  S  C N
Sbjct: 402 SVTDVHGLHEKLGRQRSVEDHNRNAKDKFRREFSERVGEVIDNLSEFKEESTSF-CSN 458


>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +1

Query: 271  DQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEK 450
            D L+R++       HD I      H  + C+ G   +S+    +K+H     KS     K
Sbjct: 1472 DNLQRKFIGSKLQSHDRINV--KPHQCIVCRKGFTARSRLLHHVKAHHNMKTKSNIFTCK 1529

Query: 451  YCLPQLVGKHND 486
            YC  + +  H+D
Sbjct: 1530 YC-GRAITNHSD 1540


>SB_44341| Best HMM Match : Paramecium_SA (HMM E-Value=1.5)
          Length = 257

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
 Frame = -1

Query: 247 YSVAQIVVLARNASYRTR--NVKHHENGFCQLRVHNLVNVHQLSGLFVHMTISNNRLGHV 74
           YS            Y TR  + KH  N  C  +  N  N H+     +   +       +
Sbjct: 137 YSKRNAFTTQAQCIYNTRAMHFKHKRNA-CPRKAQNKRNAHKHRAQTLKKKVWPYLYPFL 195

Query: 73  DFYRKNYTHFAMVKLKCSL 17
            F+   YT FA +   CSL
Sbjct: 196 SFFAITYTQFASIWFLCSL 214


>SB_49155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 77  VSQTVIRDCHVDEQTRELVYINKIMNTQLTK 169
           VS+TV R+  + ++ RE++Y   I+N  +TK
Sbjct: 58  VSRTVKRNIKMHKKRREIIYERTIVNMVMTK 88


>SB_39764| Best HMM Match : YscO (HMM E-Value=1.5)
          Length = 182

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 220 ARNASYRTRNVKHHENGFCQLRVHNLVNVHQLSGLFVHMTISNNR 86
           AR    RTR +K+H+N    +R+H   N  +L+G+   +  S  R
Sbjct: 132 ARRNLTRTRRIKNHKNSQEFIRIHK--NSQELAGISQDLAGSGKR 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,910,421
Number of Sequences: 59808
Number of extensions: 376150
Number of successful extensions: 1039
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)