Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120792.seq
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF022980-3|AAG24187.2|  396|Caenorhabditis elegans Serpentine re...    29   2.8  
Z83116-1|CAB05559.2|  480|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81586-10|CAD56598.1|  349|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.     29   3.8  
Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin ...    28   6.6  
AF100660-2|AAC68971.1|  393|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical
           protein F53H10.2 protein.
          Length = 900

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
 Frame = +1

Query: 37  PLQNVCNFSGRNRRVPDGYSRLSCGRTNQ-RVGVH*QDYE-----H--AIDKTRSHDV*H 192
           P +++   +G NRR  D + + +    N    G H  +Y+     H  +I   +SH   H
Sbjct: 13  PRRSISTITGPNRRDVDAFYQNNFPEKNGGSSGEHVPEYQASGQQHRPSIMSGQSHQNNH 72

Query: 193 FGSYTKRYAQEQ-RFARQNKIKVDEQFD-QLEREYSDKIDGFHDNIQYFKDEHYSVSCQN 366
               TK Y+ E  RF+  N      QF    +    ++   F++   Y    HYSV  + 
Sbjct: 73  LP--TKNYSYEPLRFSPPNVTPPPLQFSTNTDGNRKNQRVRFNELPNYSTPNHYSVPPRK 130

Query: 367 GSVLKSKFAKILKSHDYTDKKSIETYE 447
            S+  + F+     H Y D+ +  T++
Sbjct: 131 CSLAPNFFSSQNSHHMYPDQYTPRTWQ 157


>AF022980-3|AAG24187.2|  396|Caenorhabditis elegans Serpentine
           receptor, class w protein2 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = -2

Query: 516 PASHAYRHVAVVVFADQLGQTVFFVSFNRLFIGIIMTF*NFSKLAFQHAAILATYRIVFI 337
           P     ++V +  + D++     +V     F  + +   + S L  +    ++ YRI+ +
Sbjct: 19  PPKEIVKYVEIPSWFDEVFLKFNYVIAILQFFAVAINLIHLSVLTRKELRAISIYRIMIV 78

Query: 336 FKILDVIVKSINFIA 292
             ILD+I + ++FI+
Sbjct: 79  ICILDIISEILSFIS 93


>Z83116-1|CAB05559.2|  480|Caenorhabditis elegans Hypothetical
           protein M01B2.1 protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +1

Query: 382 SKFAKILKSHDYTDKKSIETYEKYCLPQLVGKHNDCYVAVCV*SRXLRTAATK 540
           ++F + +++HD ++K ++      C   + G  +  +V +C   R  R++ATK
Sbjct: 10  ARFVRSVENHDESEKPNLIIVFLMCALFIYGVLSIIFVTICFLRRIYRSSATK 62


>Z81586-10|CAD56598.1|  349|Caenorhabditis elegans Hypothetical
           protein T05F1.13 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 268 FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLK 381
           FD +E E  DK    +   Q+++DE   + C NG  +K
Sbjct: 291 FDGIEYELFDK--NLNSGTQFYEDEEKKIDCLNGRNIK 326


>Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical
           protein F55B12.3b protein.
          Length = 585

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 174 TGFVNCVFIILLMYTNSLVCSST*QSRITVWDTSISTGK 58
           TG  N V+ +L     S+VCS +  + I VWD +   G+
Sbjct: 413 TGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQ 451


>Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical
           protein F55B12.3a protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 174 TGFVNCVFIILLMYTNSLVCSST*QSRITVWDTSISTGK 58
           TG  N V+ +L     S+VCS +  + I VWD +   G+
Sbjct: 415 TGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQ 453


>AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 174 TGFVNCVFIILLMYTNSLVCSST*QSRITVWDTSISTGK 58
           TG  N V+ +L     S+VCS +  + I VWD +   G+
Sbjct: 415 TGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQ 453


>Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical
           protein F44A6.1a protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 241 QNKIKVDEQFDQLEREYSDKIDGFH 315
           Q K+  DE+  Q EREY+ K +  H
Sbjct: 352 QKKVYTDEELQQFEREYAQKQEQQH 376


>AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin
           protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 241 QNKIKVDEQFDQLEREYSDKIDGFH 315
           Q K+  DE+  Q EREY+ K +  H
Sbjct: 355 QKKVYTDEELQQFEREYAQKQEQQH 379


>AF100660-2|AAC68971.1|  393|Caenorhabditis elegans Hypothetical
           protein H35B03.2a protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/90 (18%), Positives = 37/90 (41%)
 Frame = +2

Query: 104 HVDEQTRELVYINKIMNTQLTKPVLMMFNISGPIRSVTRKNNDLRDRIKSKSMXXXXXXX 283
           H++E+ R+ + ++K+M+      V      +  +   TRKN     R+  +S+       
Sbjct: 200 HLEEERRKWLSVSKVMDRIRNDGVFYEIAYAESLMPATRKNTLFNGRVLIRSLKSKNIIF 259

Query: 284 XXXXXKLMDFTITSSILKMNTIR*VAKMAA 373
                 ++D      ++ M+ +  VA   A
Sbjct: 260 SSGAETMLDLRSPVDVMNMSLLWGVANNEA 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,080,202
Number of Sequences: 27780
Number of extensions: 294216
Number of successful extensions: 784
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)