Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120792.seq
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.4  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   7.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.8  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   7.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 189 LNIMRTGFVNCVFIILLMYTNSLVCSST*QSRITVWDTS 73
           LN M +  V C  + LLM TN  +      +  T  DT+
Sbjct: 691 LNTMESHEVRCTAVFLLMKTNPPLSMLQRMAEFTKLDTN 729


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 192 MLNIMRTGFVNCVFIILLMYTNSLVC 115
           +L+++  GF+  + I L +  N LVC
Sbjct: 22  LLSVLLVGFLFLILIFLSVAGNILVC 47


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 196 GSYTKRYAQEQRFARQN 246
           G Y KRY    +FA+ N
Sbjct: 109 GEYKKRYEHGLQFAKNN 125


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 173 RVLSIACS*SC*CTPTLWFVRPH 105
           RV+   CS +C     L  VRPH
Sbjct: 236 RVIPQVCSGNCKLNDILLTVRPH 258


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 196 GSYTKRYAQEQRFARQN 246
           G Y KRY    +FA+ N
Sbjct: 109 GEYKKRYEHGLQFAKNN 125


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 232 FARQNKIKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSV 354
           F +Q K+K D + +       DK+D   D  + FK++   V
Sbjct: 17  FTKQKKVKEDTELNLQTIFNEDKLDNLMD--KQFKNKSLPV 55


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 173 RVLSIACS*SC*CTPTLWFVRPH 105
           RV+   CS +C     L  VRPH
Sbjct: 236 RVIPQVCSGNCKLNDILLTVRPH 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,468
Number of Sequences: 438
Number of extensions: 3615
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)