Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120792.seq
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family...    31   0.50 
At5g45310.1 68418.m05562 expressed protein                             31   0.87 
At5g45790.1 68418.m05631 expressed protein  ; expression support...    29   2.7  
At4g24530.1 68417.m03516 expressed protein contains Pfam PF03138...    29   3.5  
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea...    28   4.7  
At5g24880.1 68418.m02946 expressed protein ; expression supporte...    28   6.1  
At2g22630.1 68415.m02682 MADS-box protein (AGL17) nearly identic...    28   6.1  
At5g54210.1 68418.m06753 NLI interacting factor (NIF) family pro...    27   8.1  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    27   8.1  

>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
           protein
          Length = 1332

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
 Frame = +1

Query: 205 TKRYAQEQRFARQNKIKVDEQ--FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVL 378
           TKR   ++  A+ + I  DE       E E  D+ D F +++    D    + C  GS L
Sbjct: 183 TKRRLPDEDNAKDDFIVGDEDTYVASDEDELDDEDDDFFESVCAICDNGGEILCCEGSCL 242

Query: 379 KSKFAKILKSHDYT------DKKSIETYEKYCLPQLVGKHNDCYV 495
           +S  A      D        +K  +E  +KY  P    K + C++
Sbjct: 243 RSFHATKKDGEDSLCDSLGFNKMQVEAIQKYFCPNCEHKIHQCFI 287


>At5g45310.1 68418.m05562 expressed protein
          Length = 352

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +1

Query: 256 VDEQFDQLEREYSD---KIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDK 426
           +++  D+LE E+ +   KI+     +Q  K+E+  +   NG   +SK  K+  S + ++ 
Sbjct: 124 MEQDLDELEDEHDEAISKIEKLEAELQELKEENLQLMEVNGKDYRSKKGKVKPSEEPSEI 183

Query: 427 KSI 435
           +SI
Sbjct: 184 RSI 186


>At5g45790.1 68418.m05631 expressed protein  ; expression supported
           by MPSS
          Length = 423

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +2

Query: 41  CKMCVIFPVEIDVSQTVIRDCHVD--EQTRELVYINK 145
           CK+   F V ID  + V+R+C VD  ++ ++L+ ++K
Sbjct: 129 CKITEKFKVLIDEEENVVRECEVDAVKRVKKLLLLSK 165


>At4g24530.1 68417.m03516 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'PsRT17-1 like protein'  based on similarity to PsRT17-1
           (GP:1778376) [Pisum sativum] which was based upon
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 519

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = -1

Query: 382 FSTRCHFGNLPNSVHL*NTGCYREIHQFYRCIRVLVDQIVHRL 254
           FS R  F NLP S+         E   F   IR L D +VHRL
Sbjct: 226 FSHRLAFDNLPESIQRLRCKVNFEALNFVPHIRELGDALVHRL 268


>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); some
           similarity to a group of proteins with homology to
           mammalian apoptosis regulators identified in zebrafish
           (PUBMED:10917738)Apaf-1(gi:7677507)
          Length = 537

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 98  DCHV---DEQTRELVYINKIMNTQLTKPVLMMF 187
           DCHV   D +TRE V +NK+ N Q+   V   F
Sbjct: 227 DCHVHLWDIRTREHVQVNKLKNNQVKDSVHCAF 259


>At5g24880.1 68418.m02946 expressed protein ; expression supported
           by MPSS
          Length = 443

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 27/140 (19%), Positives = 59/140 (42%)
 Frame = +1

Query: 55  NFSGRNRRVPDGYSRLSCGRTNQRVGVH*QDYEHAIDKTRSHDV*HFGSYTKRYAQEQRF 234
           N + ++    D   ++    T ++V    ++ E   + T+  +        +R  +E++ 
Sbjct: 294 NQANKSEEEEDVKKKIDENETPEKVDTESKEVESVEETTQEKEEEVKEEGKERVEEEEK- 352

Query: 235 ARQNKIKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHD 414
             + K+K D+Q +++E E  +K+ G  +  +  ++E  S   +   V+K K       +D
Sbjct: 353 -EKEKVKEDDQKEKVEEEEKEKVKGDEEKEKVKEEE--SAEGKKKEVVKGKKESPSAYND 409

Query: 415 YTDKKSIETYEKYCLPQLVG 474
               K  E   K  +  L G
Sbjct: 410 VIASKMQENPRKNKVLALAG 429


>At2g22630.1 68415.m02682 MADS-box protein (AGL17) nearly identical
           to MADS-box protein AGL17 [Arabidopsis thaliana]
           GI:862648
          Length = 227

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 202 RTRNVKHHENGFCQLRVHNLVNVHQLSGLFVHMTISNNRLGHVDFYRKNYTHFAMVKLKC 23
           R RN+ HHEN     +V  +   +       + T + N LGH +     Y   A V+L+ 
Sbjct: 154 RKRNLVHHENLELSRKVQRIHQENVELYKKAYGTSNTNGLGHHELVDAVYESHAQVRLQL 213

Query: 22  S 20
           S
Sbjct: 214 S 214


>At5g54210.1 68418.m06753 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 306

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 148 YEHAIDKTRSHDV*HFGSYTKRYAQEQRFARQN 246
           Y +  DKTR HDV     YTK YA+E+R   +N
Sbjct: 231 YNYFSDKTR-HDV----KYTKSYAEEKRDESRN 258


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 444 RKILFAPIGRQTQRLLRGGMRVK 512
           R+I F P+GRQ QR+L   +R++
Sbjct: 4   REIHFTPVGRQVQRVLEYPLRLE 26


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,913,851
Number of Sequences: 28952
Number of extensions: 253697
Number of successful extensions: 710
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)