Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120791.seq
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   3.8  
Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical pr...    27   8.9  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    27   8.9  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   8.9  
M11499-1|AAA28165.1|  259|Caenorhabditis elegans protein ( C.ele...    27   8.9  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 115 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 237
           + EA A   R+ K +   ALL PDA PD  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +2

Query: 284 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 382
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +2

Query: 284 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 382
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical
           protein T13F2.2 protein.
          Length = 124

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 460 SSRMKIMKKVNPRAKKQNVE*CQRQSCIAQEECQEMNK 573
           SS  ++ KKV    KK+  +  +RQS   +EE QE+ K
Sbjct: 6   SSEDELEKKVTKEQKKKETKSKKRQSEAVEEEKQEVKK 43


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 353 WPRTLNKSKCNRRIWEFNVQTYMP*FTNFQYC-DGSFTASCSDMASTCITFNSSGLAS 183
           W +++N  KC RR +  +VQT          C D   T     M+ST + +N +G +S
Sbjct: 209 WAKSINLDKCTRRPYIHHVQT--------PVCKDCQQTLEQDKMSSTVLNYNITGTSS 258


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 160
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737


>M11499-1|AAA28165.1|  259|Caenorhabditis elegans protein (
           C.elegans vitellogenin6 gene ancoding yolk protein
           VIT180. ).
          Length = 259

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 353 WPRTLNKSKCNRRIWEFNVQTYMP*FTNFQYC-DGSFTASCSDMASTCITFNSSGLAS 183
           W +++N  KC RR +  +VQT          C D   T     M+ST + +N +G +S
Sbjct: 209 WAKSINLDKCTRRPYIHHVQT--------PVCKDCQQTLEQDKMSSTVLNYNITGTSS 258


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 160
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,033,608
Number of Sequences: 27780
Number of extensions: 268928
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)