Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120791.seq
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58050.1 68416.m06471 expressed protein                             28   4.8  
At1g16120.1 68414.m01932 wall-associated kinase, putative contai...    28   4.8  
At4g21510.1 68417.m03109 F-box family protein contains Pfam PF00...    28   6.3  

>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 82  TLSSSHQSETWDPEAKAEYPRSN 150
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At1g16120.1 68414.m01932 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 730

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +3

Query: 225 HVTTRSSKTTVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 356
           + TT  S TTV +L +  +R V ++I  PD+   + LVQ  GPV
Sbjct: 70  NTTTSDSNTTVPLLSM-INREV-VNISLPDSNEPYGLVQIKGPV 111


>At4g21510.1 68417.m03109 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 225

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 234 TRSSKTTVAVLKVGESRHVRLDIEFPDAP 320
           TR+ + ++ + +V +SRH   DIE P+AP
Sbjct: 174 TRAFRNSIDLEEVSDSRHQEDDIEPPNAP 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,269,389
Number of Sequences: 28952
Number of extensions: 248518
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)