BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120790.seq (643 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 71 9e-13 U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 71 9e-13 Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 40 0.001 U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 40 0.001 U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 40 0.001 AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 39 0.003 AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 39 0.003 Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 39 0.003 Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 39 0.003 Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 39 0.003 Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 38 0.005 U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 38 0.005 AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 38 0.005 AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 38 0.005 U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 38 0.006 U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 38 0.006 U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 38 0.006 Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 38 0.008 U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 38 0.008 U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 38 0.008 U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 38 0.008 AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 37 0.014 U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 36 0.025 U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 36 0.025 U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 36 0.025 U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.025 U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.033 U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.033 AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 36 0.033 U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 35 0.043 Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.13 Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 33 0.13 Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 33 0.13 Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.13 AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 32 0.30 AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 32 0.30 Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 31 0.53 Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.53 U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.53 AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 31 0.93 Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 30 1.2 Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 30 1.2 Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 30 1.2 DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 30 1.2 Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 30 1.6 Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.6 Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 30 1.6 Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 30 1.6 U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 30 1.6 U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 30 1.6 EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 30 1.6 EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 30 1.6 EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 30 1.6 EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 30 1.6 EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 30 1.6 AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 2.8 AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 29 2.8 AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 29 2.8 Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 29 3.7 U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 29 3.7 U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 29 3.7 AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 3.7 AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 3.7 AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 3.7 U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 28 6.5 U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 6.5 U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 28 6.5 U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 6.5 AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical... 28 6.5 AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 28 6.5 AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 28 6.5 AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 28 6.5 Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 27 8.6 U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 27 8.6 >U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (splicing factor) protein4, isoform b protein. Length = 126 Score = 70.5 bits (165), Expect = 9e-13 Identities = 28/45 (62%), Positives = 38/45 (84%) Frame = +2 Query: 122 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256 R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+ Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK 54 Score = 67.7 bits (158), Expect = 7e-12 Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%) Frame = +1 Query: 178 PNDA*RLTPRFRKVRRSW*YLHSQRS-YTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 354 PND R R+ + +H R Y+R+S+GF FVRF+ERRDAE ALD DG+++DG Sbjct: 32 PNDLRRTFERYGDIGD----VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87 Query: 355 RELRVQMA 378 RELRV +A Sbjct: 88 RELRVTLA 95 >U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (splicing factor) protein4, isoform a protein. Length = 196 Score = 70.5 bits (165), Expect = 9e-13 Identities = 28/45 (62%), Positives = 38/45 (84%) Frame = +2 Query: 122 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256 R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+ Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK 54 Score = 67.7 bits (158), Expect = 7e-12 Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%) Frame = +1 Query: 178 PNDA*RLTPRFRKVRRSW*YLHSQRS-YTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 354 PND R R+ + +H R Y+R+S+GF FVRF+ERRDAE ALD DG+++DG Sbjct: 32 PNDLRRTFERYGDIGD----VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87 Query: 355 RELRVQMA 378 RELRV +A Sbjct: 88 RELRVTLA 95 >Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical protein R09B3.2 protein. Length = 83 Score = 40.3 bits (90), Expect = 0.001 Identities = 18/40 (45%), Positives = 25/40 (62%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 T RGFAF+ F E A+ A++ M+G +GR LRV +A Sbjct: 42 TGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81 >U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical protein F25B5.7d protein. Length = 374 Score = 40.3 bits (90), Expect = 0.001 Identities = 17/36 (47%), Positives = 26/36 (72%) Frame = +1 Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 +GFAF+R R AE A + +DGR++ GR++RV+ A Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185 >U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical protein F25B5.7a protein. Length = 562 Score = 40.3 bits (90), Expect = 0.001 Identities = 17/36 (47%), Positives = 26/36 (72%) Frame = +1 Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 +GFAF+R R AE A + +DGR++ GR++RV+ A Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185 >AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical protein Y111B2A.18 protein. Length = 258 Score = 39.1 bits (87), Expect = 0.003 Identities = 17/32 (53%), Positives = 22/32 (68%) Frame = +1 Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372 FAFV F + RDAE+A+ DG DGR +RV+ Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79 >AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. Length = 258 Score = 39.1 bits (87), Expect = 0.003 Identities = 17/32 (53%), Positives = 22/32 (68%) Frame = +1 Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372 FAFV F + RDAE+A+ DG DGR +RV+ Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79 >Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical protein R09B3.3 protein. Length = 85 Score = 38.7 bits (86), Expect = 0.003 Identities = 19/40 (47%), Positives = 24/40 (60%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 T RGFAFV F E A+ A+D +G +GR LRV +A Sbjct: 41 TGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80 >Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical protein F18H3.3b protein. Length = 566 Score = 38.7 bits (86), Expect = 0.003 Identities = 17/37 (45%), Positives = 26/37 (70%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369 +R S G+A+V F + DAE ALDTM+ ++ GR +R+ Sbjct: 94 SRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130 Score = 28.3 bits (60), Expect = 4.9 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +1 Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 S+GF FV F + +A A+ M+ +M+ + L V +A Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418 >Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical protein F18H3.3a protein. Length = 692 Score = 38.7 bits (86), Expect = 0.003 Identities = 17/37 (45%), Positives = 26/37 (70%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369 +R S G+A+V F + DAE ALDTM+ ++ GR +R+ Sbjct: 94 SRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130 Score = 28.3 bits (60), Expect = 4.9 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +1 Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 S+GF FV F + +A A+ M+ +M+ + L V +A Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418 >Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical protein R06C1.4 protein. Length = 84 Score = 38.3 bits (85), Expect = 0.005 Identities = 18/40 (45%), Positives = 24/40 (60%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 T RGFAFV F E A+ A++ ++G +GR LRV A Sbjct: 43 TGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82 >U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-binding protein protein. Length = 646 Score = 38.3 bits (85), Expect = 0.005 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369 TR S G+A+V F + DAE A+DTM+ L G+ +R+ Sbjct: 69 TRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105 Score = 29.1 bits (62), Expect = 2.8 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = +1 Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 +S+GF FV F +AE A+ + ++G +L++ + Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286 >AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical protein Y106G6H.2c protein. Length = 586 Score = 38.3 bits (85), Expect = 0.005 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369 TR S G+A+V F + DAE A+DTM+ L G+ +R+ Sbjct: 69 TRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105 Score = 29.1 bits (62), Expect = 2.8 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = +1 Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 +S+GF FV F +AE A+ + ++G +L++ + Sbjct: 190 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 226 >AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical protein Y106G6H.2a protein. Length = 646 Score = 38.3 bits (85), Expect = 0.005 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369 TR S G+A+V F + DAE A+DTM+ L G+ +R+ Sbjct: 69 TRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105 Score = 29.1 bits (62), Expect = 2.8 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = +1 Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 +S+GF FV F +AE A+ + ++G +L++ + Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286 >U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (splicing factor) protein5, isoform b protein. Length = 166 Score = 37.9 bits (84), Expect = 0.006 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%) Frame = +1 Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 378 GFAFV F + RDAE+A +DG+ ++G +R V+MA Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72 >U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (splicing factor) protein5, isoform d protein. Length = 208 Score = 37.9 bits (84), Expect = 0.006 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%) Frame = +1 Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 378 GFAFV F + RDAE+A +DG+ ++G +R V+MA Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72 >U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (splicing factor) protein5, isoform a protein. Length = 208 Score = 37.9 bits (84), Expect = 0.006 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%) Frame = +1 Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 378 GFAFV F + RDAE+A +DG+ ++G +R V+MA Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72 >Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical protein T23F6.4 protein. Length = 872 Score = 37.5 bits (83), Expect = 0.008 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +1 Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 S GF FV+F+ DA+ AL M G +LDG L ++++ Sbjct: 688 SMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKIS 724 Score = 30.3 bits (65), Expect = 1.2 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 167 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265 NL Y T +DL+ +F++ GEV ++ + D+ G Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTG 317 Score = 28.3 bits (60), Expect = 4.9 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +1 Query: 256 YTRES--RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372 YT+E RGFAFV F + A AL + + ++L V+ Sbjct: 36 YTKEGKFRGFAFVGFLDEGSASNALAKSNQTFFNSKKLTVE 76 >U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (splicing factor) protein6, isoform c protein. Length = 118 Score = 37.5 bits (83), Expect = 0.008 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +1 Query: 205 RFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 RF ++R+ W R GFAFV + + RDAE+A+ +DG + G RV+++ Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74 >U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (splicing factor) protein6, isoform b protein. Length = 153 Score = 37.5 bits (83), Expect = 0.008 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +1 Query: 205 RFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 RF ++R+ W R GFAFV + + RDAE+A+ +DG + G RV+++ Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74 >U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (splicing factor) protein6, isoform a protein. Length = 179 Score = 37.5 bits (83), Expect = 0.008 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +1 Query: 205 RFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 RF ++R+ W R GFAFV + + RDAE+A+ +DG + G RV+++ Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74 >AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical protein Y46G5A.13 protein. Length = 434 Score = 36.7 bits (81), Expect = 0.014 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 T + +G+ FV + R DAE A+D M+G L R +R A Sbjct: 169 TNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWA 208 >U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical protein C18A3.5f protein. Length = 295 Score = 35.9 bits (79), Expect = 0.025 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 T +S+G+ FV + +R +AE A++ M+G+ L R +R A Sbjct: 59 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 98 >U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical protein C18A3.5e protein. Length = 305 Score = 35.9 bits (79), Expect = 0.025 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 T +S+G+ FV + +R +AE A++ M+G+ L R +R A Sbjct: 69 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 108 >U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical protein C18A3.5a protein. Length = 408 Score = 35.9 bits (79), Expect = 0.025 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 T +S+G+ FV + +R +AE A++ M+G+ L R +R A Sbjct: 172 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211 Score = 32.7 bits (71), Expect = 0.23 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = +1 Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 +AFV F + A +AL TM+ R+L RE++V A Sbjct: 86 YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA 119 >U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical protein C18A3.5b protein. Length = 376 Score = 35.9 bits (79), Expect = 0.025 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 T +S+G+ FV + +R +AE A++ M+G+ L R +R A Sbjct: 140 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 179 >U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on x protein 1 protein. Length = 415 Score = 35.5 bits (78), Expect = 0.033 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +1 Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 R S+GF FV +DAE A + G M++GR++ V A Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227 Score = 30.7 bits (66), Expect = 0.93 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +2 Query: 140 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 244 DG L V N+ +R DL+ +FE+ G V D+ I Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184 >U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein protein. Length = 415 Score = 35.5 bits (78), Expect = 0.033 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +1 Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 R S+GF FV +DAE A + G M++GR++ V A Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227 Score = 30.7 bits (66), Expect = 0.93 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +2 Query: 140 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 244 DG L V N+ +R DL+ +FE+ G V D+ I Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184 >AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical protein F58D5.1 protein. Length = 611 Score = 35.5 bits (78), Expect = 0.033 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = +1 Query: 196 LTPRFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLD-GRELRVQ 372 L P F K + W + SRG+AFV + + DA A T DG + G+ L+V Sbjct: 216 LVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVN 275 Query: 373 MA 378 ++ Sbjct: 276 VS 277 Score = 29.1 bits (62), Expect = 2.8 Identities = 11/39 (28%), Positives = 24/39 (61%) Frame = +1 Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 ++ + +AF+ F ER D +A++ +G+ L+G + +A Sbjct: 407 KKVKDYAFIHFNERDDCLKAMEEWNGKELEGTVVEASLA 445 >U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna binding domain) containingprotein 5 protein. Length = 289 Score = 35.1 bits (77), Expect = 0.043 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +1 Query: 238 LHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 L R + RG+ +V + DAE+++ MDG +DG + V+M Sbjct: 164 LPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEM 209 >Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical protein C07A4.1 protein. Length = 360 Score = 33.5 bits (73), Expect = 0.13 Identities = 14/40 (35%), Positives = 26/40 (65%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 T++S+G+ FV F +++AE A+ M+G+ + R +R A Sbjct: 172 TQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWA 211 >Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical protein W02B12.3c protein. Length = 150 Score = 33.5 bits (73), Expect = 0.13 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +1 Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363 GF FV F ++RDAE+A+ ++G+ L G + Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66 >Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical protein W02B12.3b protein. Length = 148 Score = 33.5 bits (73), Expect = 0.13 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +1 Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363 GF FV F ++RDAE+A+ ++G+ L G + Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66 >Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical protein W02B12.3a protein. Length = 312 Score = 33.5 bits (73), Expect = 0.13 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +1 Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363 GF FV F ++RDAE+A+ ++G+ L G + Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66 >AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical protein Y116A8C.34 protein. Length = 331 Score = 32.3 bits (70), Expect = 0.30 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +1 Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 RGF FV F DA A+D M+ L G+ +RV A Sbjct: 52 RGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87 >AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily assigned gene nameprotein 262 protein. Length = 302 Score = 32.3 bits (70), Expect = 0.30 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = +1 Query: 247 QRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372 + S T +S+G+ FV F + D A+ MDG+ + R ++++ Sbjct: 236 RESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLR 277 >Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical protein F26A3.2 protein. Length = 154 Score = 31.5 bits (68), Expect = 0.53 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR 366 GF FV ++ R DAE AL + +D R +R Sbjct: 79 GFCFVEYYTREDAELALQNISNTRMDDRVIR 109 >Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein C08B11.5 protein. Length = 388 Score = 31.5 bits (68), Expect = 0.53 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1 Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 S+GFAF+ F ++ AL+ M+G+ L R + V A Sbjct: 141 SKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177 Score = 27.9 bits (59), Expect = 6.5 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 T +GF FV F DA+ A+ ++ L G+ ++V A Sbjct: 50 TANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 89 >U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding protein protein. Length = 398 Score = 31.5 bits (68), Expect = 0.53 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1 Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 S+GFAF+ F ++ AL+ M+G+ L R + V A Sbjct: 151 SKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 187 Score = 27.9 bits (59), Expect = 6.5 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 T +GF FV F DA+ A+ ++ L G+ ++V A Sbjct: 60 TANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 99 >AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical protein T08B6.5 protein. Length = 177 Score = 30.7 bits (66), Expect = 0.93 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = +2 Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265 S+ V N+ +++T ++ F CG+V + IP+D+ G Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTG 84 >Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical protein W02B12.2 protein. Length = 281 Score = 30.3 bits (65), Expect = 1.2 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = +1 Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363 GF FV F ++RDA++A+ ++G+ L G + Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERV 65 >Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical protein R74.5b protein. Length = 286 Score = 30.3 bits (65), Expect = 1.2 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +1 Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 R S+GF FV DA+ A +G ++GR + V +A Sbjct: 18 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56 >Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical protein R74.5a protein. Length = 404 Score = 30.3 bits (65), Expect = 1.2 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +1 Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 R S+GF FV DA+ A +G ++GR + V +A Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174 >DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding protein ASD-1 protein. Length = 404 Score = 30.3 bits (65), Expect = 1.2 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +1 Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 R S+GF FV DA+ A +G ++GR + V +A Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174 >Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical protein F39H2.2a protein. Length = 427 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 182 TTPEDLRRVFERCGEVGDIYIPRDRTQG 265 TT EDL +F R G++ + I RDR G Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279 >Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical protein C18D11.4 protein. Length = 309 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 SRGF F+ F DA A D + LDG ++RV + Sbjct: 116 SRGFGFIYFNLIEDATAARDKLCNTDLDGHKIRVDFS 152 Score = 29.1 bits (62), Expect = 2.8 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = +2 Query: 155 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265 L V NL+ TT +DLR VF GE+ + DR G Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSG 114 >Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical protein F39H2.2a protein. Length = 427 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 182 TTPEDLRRVFERCGEVGDIYIPRDRTQG 265 TT EDL +F R G++ + I RDR G Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279 >Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical protein F39H2.2b protein. Length = 358 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 182 TTPEDLRRVFERCGEVGDIYIPRDRTQG 265 TT EDL +F R G++ + I RDR G Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSG 210 >U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna binding protein familyprotein 1, isoform a protein. Length = 584 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375 T+ S+G FV F+ R+DA EA + ++++G VQM Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131 Score = 27.5 bits (58), Expect = 8.6 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 T S+ F FV + + A A+ M+G + + L+VQ+ Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574 >U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribonucleoprotein protein. Length = 584 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375 T+ S+G FV F+ R+DA EA + ++++G VQM Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131 Score = 27.5 bits (58), Expect = 8.6 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 T S+ F FV + + A A+ M+G + + L+VQ+ Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574 >EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA binding protein variantE protein. Length = 513 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375 T+ S+G FV F+ R+DA EA + ++++G VQM Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131 Score = 27.5 bits (58), Expect = 8.6 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 T S+ F FV + + A A+ M+G + + L+VQ+ Sbjct: 465 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503 >EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA binding protein variantD protein. Length = 327 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375 T+ S+G FV F+ R+DA EA + ++++G VQM Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131 >EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA binding protein variantC protein. Length = 378 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375 T+ S+G FV F+ R+DA EA + ++++G VQM Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131 >EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA binding protein variantB protein. Length = 193 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375 T+ S+G FV F+ R+DA EA + ++++G VQM Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131 >EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA binding protein variantA protein. Length = 584 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375 T+ S+G FV F+ R+DA EA + ++++G VQM Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131 Score = 27.5 bits (58), Expect = 8.6 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 T S+ F FV + + A A+ M+G + + L+VQ+ Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574 >AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical protein Y106G6H.2b protein. Length = 583 Score = 29.1 bits (62), Expect = 2.8 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = +1 Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 +S+GF FV F +AE A+ + ++G +L++ + Sbjct: 187 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 223 >AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical protein Y55F3AM.3c protein. Length = 435 Score = 29.1 bits (62), Expect = 2.8 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +1 Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 RE+RGFA + F DA+++ + ++ L GR +R+ + Sbjct: 164 RENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 201 >AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical protein Y55F3AM.3a protein. Length = 580 Score = 29.1 bits (62), Expect = 2.8 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +1 Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 RE+RGFA + F DA+++ + ++ L GR +R+ + Sbjct: 309 RENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 346 >Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical protein Y69H2.11 protein. Length = 887 Score = 28.7 bits (61), Expect = 3.7 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Frame = -1 Query: 493 CGNGCGYDCASXYDGGNETWTCACD---RNDSCMAMRGDHIA-PSEREVPCRPTFVRPSC 326 C NG CAS DG +TC CD +C M I P C+P F C Sbjct: 383 CNNG---KCASTIDGITTNYTCTCDDGWTGTNCDTMIDFCIPNPCSYNSTCKPKFKGYDC 439 >U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical protein EEED8.4 protein. Length = 191 Score = 28.7 bits (61), Expect = 3.7 Identities = 10/35 (28%), Positives = 22/35 (62%) Frame = +2 Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256 S+ + N+ + +T E++ F+ CG++ IP+D+ Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDK 90 >U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical protein C30B5.4 protein. Length = 302 Score = 28.7 bits (61), Expect = 3.7 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369 T +S+GFAF+ + ++R A+D +G L R +RV Sbjct: 75 TGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRV 111 Score = 27.5 bits (58), Expect = 8.6 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +2 Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268 + L+Y + D+ VF + GEV +I + RD+ GK Sbjct: 42 IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGK 77 >AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna binding domain) containingprotein 6, isoform c protein. Length = 346 Score = 28.7 bits (61), Expect = 3.7 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369 T + FAFV + A A ++M+G+ML GR L+V Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175 >AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna binding domain) containingprotein 6, isoform a protein. Length = 339 Score = 28.7 bits (61), Expect = 3.7 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369 T + FAFV + A A ++M+G+ML GR L+V Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175 >AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna binding domain) containingprotein 6, isoform b protein. Length = 749 Score = 28.7 bits (61), Expect = 3.7 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369 T + FAFV + A A ++M+G+ML GR L+V Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175 >U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor U2AF65 protein. Length = 496 Score = 27.9 bits (59), Expect = 6.5 Identities = 11/37 (29%), Positives = 23/37 (62%) Frame = +1 Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 S+G+AF + + ++A+ ++G L ++L VQ+A Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366 >U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical protein C27A2.5 protein. Length = 188 Score = 27.9 bits (59), Expect = 6.5 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%) Frame = -1 Query: 511 VEAKSDCGN-GCGYDCASXYDGGNETWTCACDRNDSCMAMR 392 V+ + CG GCG C GG C C R C R Sbjct: 57 VKRQGGCGCCGCGCGCCGCGGGGGGGCGCCCCRPKCCCCCR 97 >U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna binding domain) containingprotein 7 protein. Length = 332 Score = 27.9 bits (59), Expect = 6.5 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +1 Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369 RG+AF+ + ++ + A DG +DG+ L V Sbjct: 144 RGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVV 176 >U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein F40H6.5 protein. Length = 1288 Score = 27.9 bits (59), Expect = 6.5 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 92 ISILFKMSYGRPPPRIDGMVSLKVDNL 172 I ++F ++ G PPP IDG + + +D L Sbjct: 1238 IYMMFNVNQGGPPPVIDGYLEITLDCL 1264 >AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical protein Y67D8C.9 protein. Length = 1073 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +1 Query: 241 HSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 354 H RS+ ++ + A VR+ R AE+ D + DG Sbjct: 604 HEYRSFLKDRKASASVRYRGSRSAEDGSTLFDDALFDG 641 >AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing factor protein 1,isoform a protein. Length = 496 Score = 27.9 bits (59), Expect = 6.5 Identities = 11/37 (29%), Positives = 23/37 (62%) Frame = +1 Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 S+G+AF + + ++A+ ++G L ++L VQ+A Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366 >AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing factor protein 1,isoform d protein. Length = 471 Score = 27.9 bits (59), Expect = 6.5 Identities = 11/37 (29%), Positives = 23/37 (62%) Frame = +1 Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 S+G+AF + + ++A+ ++G L ++L VQ+A Sbjct: 305 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 341 >AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing factor protein 1,isoform c protein. Length = 474 Score = 27.9 bits (59), Expect = 6.5 Identities = 11/37 (29%), Positives = 23/37 (62%) Frame = +1 Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378 S+G+AF + + ++A+ ++G L ++L VQ+A Sbjct: 308 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 344 >Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical protein F35H8.5 protein. Length = 456 Score = 27.5 bits (58), Expect = 8.6 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = +1 Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDG 354 S+G FVRF ++ +A+ A+ T++G + G Sbjct: 168 SKGVGFVRFDKKDEADVAIKTLNGSIPSG 196 >U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna binding protein familyprotein 1, isoform b protein. Length = 420 Score = 27.5 bits (58), Expect = 8.6 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375 T S+ F FV + + A A+ M+G + + L+VQ+ Sbjct: 372 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,942,877 Number of Sequences: 27780 Number of extensions: 258029 Number of successful extensions: 817 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 719 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 817 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1427403330 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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