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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120790.seq
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23484-3|AAK68298.1|  126|Caenorhabditis elegans Sr protein (spl...    71   9e-13
U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein (spl...    71   9e-13
Z81108-1|CAB03236.1|   83|Caenorhabditis elegans Hypothetical pr...    40   0.001
U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical p...    40   0.001
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    40   0.001
AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...    39   0.003
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.        39   0.003
Z81108-4|CAB03237.1|   85|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z81106-3|CAB03222.1|   84|Caenorhabditis elegans Hypothetical pr...    38   0.005
U24123-1|AAA65224.1|  646|Caenorhabditis elegans polyadenylate-b...    38   0.005
AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical ...    38   0.005
AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical ...    38   0.005
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    38   0.006
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    38   0.006
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    38   0.006
Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical pr...    38   0.008
U41007-10|AAL32214.1|  118|Caenorhabditis elegans Sr protein (sp...    38   0.008
U41007-9|AAL32213.1|  153|Caenorhabditis elegans Sr protein (spl...    38   0.008
U41007-8|AAA82270.1|  179|Caenorhabditis elegans Sr protein (spl...    38   0.008
AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical ...    37   0.014
U28944-7|AAN63457.1|  295|Caenorhabditis elegans Hypothetical pr...    36   0.025
U28944-6|AAN63456.1|  305|Caenorhabditis elegans Hypothetical pr...    36   0.025
U28944-5|AAK68191.1|  408|Caenorhabditis elegans Hypothetical pr...    36   0.025
U28944-4|AAK68192.1|  376|Caenorhabditis elegans Hypothetical pr...    36   0.025
U41531-7|AAA83161.2|  415|Caenorhabditis elegans Feminizing gene...    36   0.033
U14946-1|AAA67723.1|  415|Caenorhabditis elegans ribonucleoprote...    36   0.033
AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    36   0.033
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    35   0.043
Z78536-3|CAB01717.2|  360|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z66521-4|CAD59160.1|  150|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z66521-3|CAD59159.1|  148|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    33   0.13 
AL117204-22|CAB55151.1|  331|Caenorhabditis elegans Hypothetical...    32   0.30 
AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily a...    32   0.30 
Z78419-2|CAB01702.1|  154|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   0.53 
AF038623-4|AAO91699.1|  177|Caenorhabditis elegans Hypothetical ...    31   0.93 
Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z36238-4|CAD82915.1|  286|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z36238-3|CAA85276.1|  404|Caenorhabditis elegans Hypothetical pr...    30   1.2  
DQ485531-1|ABF22491.1|  404|Caenorhabditis elegans RNA-binding p...    30   1.2  
Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna b...    30   1.6  
U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type ribon...    30   1.6  
EF523770-1|ABS18836.1|  513|Caenorhabditis elegans ELAV-type RNA...    30   1.6  
EF523769-1|ABS18835.1|  327|Caenorhabditis elegans ELAV-type RNA...    30   1.6  
EF523768-1|ABS18834.1|  378|Caenorhabditis elegans ELAV-type RNA...    30   1.6  
EF523767-1|ABS18833.1|  193|Caenorhabditis elegans ELAV-type RNA...    30   1.6  
EF523766-1|ABS18832.1|  584|Caenorhabditis elegans ELAV-type RNA...    30   1.6  
AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical ...    29   2.8  
AC024826-10|AAM97977.1|  435|Caenorhabditis elegans Hypothetical...    29   2.8  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    29   3.7  
U23484-11|AAC46764.2|  191|Caenorhabditis elegans Hypothetical p...    29   3.7  
U23450-2|AAK31468.1|  302|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC024791-23|AAM81102.1|  346|Caenorhabditis elegans Rnp (rrm rna...    29   3.7  
AC024791-22|AAF60676.1|  339|Caenorhabditis elegans Rnp (rrm rna...    29   3.7  
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    29   3.7  
U79157-1|AAC26982.1|  496|Caenorhabditis elegans splicing factor...    28   6.5  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna bi...    28   6.5  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    28   6.5  
AC024875-3|AAK29989.1|  496|Caenorhabditis elegans U2af splicing...    28   6.5  
AC024875-2|AAM44400.1|  471|Caenorhabditis elegans U2af splicing...    28   6.5  
AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing...    28   6.5  
Z36752-6|CAA85327.1|  456|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U80455-2|AAB37882.2|  420|Caenorhabditis elegans Elav-type rna b...    27   8.6  

>U23484-3|AAK68298.1|  126|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform b protein.
          Length = 126

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 28/45 (62%), Positives = 38/45 (84%)
 Frame = +2

Query: 122 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
           R  P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+
Sbjct: 10  RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK 54



 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
 Frame = +1

Query: 178 PNDA*RLTPRFRKVRRSW*YLHSQRS-YTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 354
           PND  R   R+  +      +H  R  Y+R+S+GF FVRF+ERRDAE ALD  DG+++DG
Sbjct: 32  PNDLRRTFERYGDIGD----VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87

Query: 355 RELRVQMA 378
           RELRV +A
Sbjct: 88  RELRVTLA 95


>U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform a protein.
          Length = 196

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 28/45 (62%), Positives = 38/45 (84%)
 Frame = +2

Query: 122 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
           R  P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+
Sbjct: 10  RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK 54



 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
 Frame = +1

Query: 178 PNDA*RLTPRFRKVRRSW*YLHSQRS-YTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 354
           PND  R   R+  +      +H  R  Y+R+S+GF FVRF+ERRDAE ALD  DG+++DG
Sbjct: 32  PNDLRRTFERYGDIGD----VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87

Query: 355 RELRVQMA 378
           RELRV +A
Sbjct: 88  RELRVTLA 95


>Z81108-1|CAB03236.1|   83|Caenorhabditis elegans Hypothetical
           protein R09B3.2 protein.
          Length = 83

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           T   RGFAF+ F E   A+ A++ M+G   +GR LRV +A
Sbjct: 42  TGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81


>U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical
           protein F25B5.7d protein.
          Length = 374

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/36 (47%), Positives = 26/36 (72%)
 Frame = +1

Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           +GFAF+R   R  AE A + +DGR++ GR++RV+ A
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/36 (47%), Positives = 26/36 (72%)
 Frame = +1

Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           +GFAF+R   R  AE A + +DGR++ GR++RV+ A
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185


>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +1

Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
           FAFV F + RDAE+A+   DG   DGR +RV+
Sbjct: 48  FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +1

Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
           FAFV F + RDAE+A+   DG   DGR +RV+
Sbjct: 48  FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79


>Z81108-4|CAB03237.1|   85|Caenorhabditis elegans Hypothetical
           protein R09B3.3 protein.
          Length = 85

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           T   RGFAFV F E   A+ A+D  +G   +GR LRV +A
Sbjct: 41  TGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80


>Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical
           protein F18H3.3b protein.
          Length = 566

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
           +R S G+A+V F +  DAE ALDTM+  ++ GR +R+
Sbjct: 94  SRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           S+GF FV F +  +A  A+  M+ +M+  + L V +A
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
           +R S G+A+V F +  DAE ALDTM+  ++ GR +R+
Sbjct: 94  SRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           S+GF FV F +  +A  A+  M+ +M+  + L V +A
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418


>Z81106-3|CAB03222.1|   84|Caenorhabditis elegans Hypothetical
           protein R06C1.4 protein.
          Length = 84

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           T   RGFAFV F E   A+ A++ ++G   +GR LRV  A
Sbjct: 43  TGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82


>U24123-1|AAA65224.1|  646|Caenorhabditis elegans
           polyadenylate-binding protein protein.
          Length = 646

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
           TR S G+A+V F +  DAE A+DTM+   L G+ +R+
Sbjct: 69  TRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           +S+GF FV F    +AE A+  +    ++G +L++ +
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286


>AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2c protein.
          Length = 586

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
           TR S G+A+V F +  DAE A+DTM+   L G+ +R+
Sbjct: 69  TRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           +S+GF FV F    +AE A+  +    ++G +L++ +
Sbjct: 190 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 226


>AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2a protein.
          Length = 646

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
           TR S G+A+V F +  DAE A+DTM+   L G+ +R+
Sbjct: 69  TRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           +S+GF FV F    +AE A+  +    ++G +L++ +
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +1

Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 378
           GFAFV F + RDAE+A   +DG+ ++G  +R  V+MA
Sbjct: 36  GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +1

Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 378
           GFAFV F + RDAE+A   +DG+ ++G  +R  V+MA
Sbjct: 36  GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +1

Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 378
           GFAFV F + RDAE+A   +DG+ ++G  +R  V+MA
Sbjct: 36  GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72


>Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical
           protein T23F6.4 protein.
          Length = 872

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +1

Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           S GF FV+F+   DA+ AL  M G +LDG  L ++++
Sbjct: 688 SMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKIS 724



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 167 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
           NL Y T  +DL+ +F++ GEV ++ +  D+  G
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTG 317



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 256 YTRES--RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
           YT+E   RGFAFV F +   A  AL   +    + ++L V+
Sbjct: 36  YTKEGKFRGFAFVGFLDEGSASNALAKSNQTFFNSKKLTVE 76


>U41007-10|AAL32214.1|  118|Caenorhabditis elegans Sr protein
           (splicing factor) protein6, isoform c protein.
          Length = 118

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +1

Query: 205 RFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           RF ++R+ W          R   GFAFV + + RDAE+A+  +DG  + G   RV+++
Sbjct: 25  RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74


>U41007-9|AAL32213.1|  153|Caenorhabditis elegans Sr protein
           (splicing factor) protein6, isoform b protein.
          Length = 153

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +1

Query: 205 RFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           RF ++R+ W          R   GFAFV + + RDAE+A+  +DG  + G   RV+++
Sbjct: 25  RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74


>U41007-8|AAA82270.1|  179|Caenorhabditis elegans Sr protein
           (splicing factor) protein6, isoform a protein.
          Length = 179

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +1

Query: 205 RFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           RF ++R+ W          R   GFAFV + + RDAE+A+  +DG  + G   RV+++
Sbjct: 25  RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74


>AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical
           protein Y46G5A.13 protein.
          Length = 434

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           T + +G+ FV +  R DAE A+D M+G  L  R +R   A
Sbjct: 169 TNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWA 208


>U28944-7|AAN63457.1|  295|Caenorhabditis elegans Hypothetical
           protein C18A3.5f protein.
          Length = 295

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           T +S+G+ FV + +R +AE A++ M+G+ L  R +R   A
Sbjct: 59  TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 98


>U28944-6|AAN63456.1|  305|Caenorhabditis elegans Hypothetical
           protein C18A3.5e protein.
          Length = 305

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           T +S+G+ FV + +R +AE A++ M+G+ L  R +R   A
Sbjct: 69  TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 108


>U28944-5|AAK68191.1|  408|Caenorhabditis elegans Hypothetical
           protein C18A3.5a protein.
          Length = 408

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           T +S+G+ FV + +R +AE A++ M+G+ L  R +R   A
Sbjct: 172 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           +AFV F +   A +AL TM+ R+L  RE++V  A
Sbjct: 86  YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA 119


>U28944-4|AAK68192.1|  376|Caenorhabditis elegans Hypothetical
           protein C18A3.5b protein.
          Length = 376

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           T +S+G+ FV + +R +AE A++ M+G+ L  R +R   A
Sbjct: 140 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 179


>U41531-7|AAA83161.2|  415|Caenorhabditis elegans Feminizing gene on
           x protein 1 protein.
          Length = 415

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           R S+GF FV     +DAE A   + G M++GR++ V  A
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227



 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 140 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 244
           DG   L V N+ +R    DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184


>U14946-1|AAA67723.1|  415|Caenorhabditis elegans ribonucleoprotein
           protein.
          Length = 415

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           R S+GF FV     +DAE A   + G M++GR++ V  A
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227



 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 140 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 244
           DG   L V N+ +R    DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184


>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 196 LTPRFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLD-GRELRVQ 372
           L P F K  + W         +  SRG+AFV +  + DA  A  T DG  +  G+ L+V 
Sbjct: 216 LVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVN 275

Query: 373 MA 378
           ++
Sbjct: 276 VS 277



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +1

Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           ++ + +AF+ F ER D  +A++  +G+ L+G  +   +A
Sbjct: 407 KKVKDYAFIHFNERDDCLKAMEEWNGKELEGTVVEASLA 445


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 238 LHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           L   R +    RG+ +V +    DAE+++  MDG  +DG  + V+M
Sbjct: 164 LPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEM 209


>Z78536-3|CAB01717.2|  360|Caenorhabditis elegans Hypothetical
           protein C07A4.1 protein.
          Length = 360

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           T++S+G+ FV F  +++AE A+  M+G+ +  R +R   A
Sbjct: 172 TQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWA 211


>Z66521-4|CAD59160.1|  150|Caenorhabditis elegans Hypothetical
           protein W02B12.3c protein.
          Length = 150

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363
           GF FV F ++RDAE+A+  ++G+ L G  +
Sbjct: 37  GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66


>Z66521-3|CAD59159.1|  148|Caenorhabditis elegans Hypothetical
           protein W02B12.3b protein.
          Length = 148

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363
           GF FV F ++RDAE+A+  ++G+ L G  +
Sbjct: 37  GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66


>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363
           GF FV F ++RDAE+A+  ++G+ L G  +
Sbjct: 37  GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66


>AL117204-22|CAB55151.1|  331|Caenorhabditis elegans Hypothetical
           protein Y116A8C.34 protein.
          Length = 331

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           RGF FV F    DA  A+D M+   L G+ +RV  A
Sbjct: 52  RGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87


>AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 262 protein.
          Length = 302

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 247 QRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
           + S T +S+G+ FV F +  D   A+  MDG+ +  R ++++
Sbjct: 236 RESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLR 277


>Z78419-2|CAB01702.1|  154|Caenorhabditis elegans Hypothetical
           protein F26A3.2 protein.
          Length = 154

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR 366
           GF FV ++ R DAE AL  +    +D R +R
Sbjct: 79  GFCFVEYYTREDAELALQNISNTRMDDRVIR 109


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           S+GFAF+ F     ++ AL+ M+G+ L  R + V  A
Sbjct: 141 SKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           T   +GF FV F    DA+ A+  ++   L G+ ++V  A
Sbjct: 50  TANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 89


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           S+GFAF+ F     ++ AL+ M+G+ L  R + V  A
Sbjct: 151 SKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 187



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           T   +GF FV F    DA+ A+  ++   L G+ ++V  A
Sbjct: 60  TANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 99


>AF038623-4|AAO91699.1|  177|Caenorhabditis elegans Hypothetical
           protein T08B6.5 protein.
          Length = 177

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
           S+ V N+ +++T  ++   F  CG+V  + IP+D+  G
Sbjct: 47  SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTG 84


>Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical
           protein W02B12.2 protein.
          Length = 281

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363
           GF FV F ++RDA++A+  ++G+ L G  +
Sbjct: 36  GFGFVDFQDQRDADDAVHDLNGKELCGERV 65


>Z36238-4|CAD82915.1|  286|Caenorhabditis elegans Hypothetical
           protein R74.5b protein.
          Length = 286

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           R S+GF FV      DA+ A    +G  ++GR + V +A
Sbjct: 18  RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56


>Z36238-3|CAA85276.1|  404|Caenorhabditis elegans Hypothetical
           protein R74.5a protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           R S+GF FV      DA+ A    +G  ++GR + V +A
Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174


>DQ485531-1|ABF22491.1|  404|Caenorhabditis elegans RNA-binding
           protein ASD-1 protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           R S+GF FV      DA+ A    +G  ++GR + V +A
Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174


>Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 182 TTPEDLRRVFERCGEVGDIYIPRDRTQG 265
           TT EDL  +F R G++ +  I RDR  G
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           SRGF F+ F    DA  A D +    LDG ++RV  +
Sbjct: 116 SRGFGFIYFNLIEDATAARDKLCNTDLDGHKIRVDFS 152



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 155 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
           L V NL+  TT +DLR VF   GE+    +  DR  G
Sbjct: 78  LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSG 114


>Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 182 TTPEDLRRVFERCGEVGDIYIPRDRTQG 265
           TT EDL  +F R G++ +  I RDR  G
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279


>Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical
           protein F39H2.2b protein.
          Length = 358

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 182 TTPEDLRRVFERCGEVGDIYIPRDRTQG 265
           TT EDL  +F R G++ +  I RDR  G
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSG 210


>U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna
           binding protein familyprotein 1, isoform a protein.
          Length = 584

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
           T+ S+G  FV F+ R+DA EA   +   ++++G    VQM
Sbjct: 92  TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           T  S+ F FV +   + A  A+  M+G  +  + L+VQ+
Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574


>U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type
           ribonucleoprotein protein.
          Length = 584

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
           T+ S+G  FV F+ R+DA EA   +   ++++G    VQM
Sbjct: 92  TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           T  S+ F FV +   + A  A+  M+G  +  + L+VQ+
Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574


>EF523770-1|ABS18836.1|  513|Caenorhabditis elegans ELAV-type RNA
           binding protein variantE protein.
          Length = 513

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
           T+ S+G  FV F+ R+DA EA   +   ++++G    VQM
Sbjct: 92  TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           T  S+ F FV +   + A  A+  M+G  +  + L+VQ+
Sbjct: 465 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503


>EF523769-1|ABS18835.1|  327|Caenorhabditis elegans ELAV-type RNA
           binding protein variantD protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
           T+ S+G  FV F+ R+DA EA   +   ++++G    VQM
Sbjct: 92  TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131


>EF523768-1|ABS18834.1|  378|Caenorhabditis elegans ELAV-type RNA
           binding protein variantC protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
           T+ S+G  FV F+ R+DA EA   +   ++++G    VQM
Sbjct: 92  TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131


>EF523767-1|ABS18833.1|  193|Caenorhabditis elegans ELAV-type RNA
           binding protein variantB protein.
          Length = 193

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
           T+ S+G  FV F+ R+DA EA   +   ++++G    VQM
Sbjct: 92  TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131


>EF523766-1|ABS18832.1|  584|Caenorhabditis elegans ELAV-type RNA
           binding protein variantA protein.
          Length = 584

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
           T+ S+G  FV F+ R+DA EA   +   ++++G    VQM
Sbjct: 92  TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           T  S+ F FV +   + A  A+  M+G  +  + L+VQ+
Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574


>AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2b protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           +S+GF FV F    +AE A+  +    ++G +L++ +
Sbjct: 187 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 223


>AC024826-10|AAM97977.1|  435|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3c protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           RE+RGFA + F    DA+++ + ++   L GR +R+ +
Sbjct: 164 RENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 201


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           RE+RGFA + F    DA+++ + ++   L GR +R+ +
Sbjct: 309 RENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 346


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
 Frame = -1

Query: 493 CGNGCGYDCASXYDGGNETWTCACD---RNDSCMAMRGDHIA-PSEREVPCRPTFVRPSC 326
           C NG    CAS  DG    +TC CD      +C  M    I  P      C+P F    C
Sbjct: 383 CNNG---KCASTIDGITTNYTCTCDDGWTGTNCDTMIDFCIPNPCSYNSTCKPKFKGYDC 439


>U23484-11|AAC46764.2|  191|Caenorhabditis elegans Hypothetical
           protein EEED8.4 protein.
          Length = 191

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +2

Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
           S+ + N+ + +T E++   F+ CG++    IP+D+
Sbjct: 56  SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDK 90


>U23450-2|AAK31468.1|  302|Caenorhabditis elegans Hypothetical
           protein C30B5.4 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
           T +S+GFAF+ + ++R    A+D  +G  L  R +RV
Sbjct: 75  TGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRV 111



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
           +  L+Y  +  D+  VF + GEV +I + RD+  GK
Sbjct: 42  IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGK 77


>AC024791-23|AAM81102.1|  346|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform c protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
           T   + FAFV +     A  A ++M+G+ML GR L+V
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175


>AC024791-22|AAF60676.1|  339|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform a protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
           T   + FAFV +     A  A ++M+G+ML GR L+V
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
           T   + FAFV +     A  A ++M+G+ML GR L+V
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175


>U79157-1|AAC26982.1|  496|Caenorhabditis elegans splicing factor
           U2AF65 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           S+G+AF  + +    ++A+  ++G  L  ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = -1

Query: 511 VEAKSDCGN-GCGYDCASXYDGGNETWTCACDRNDSCMAMR 392
           V+ +  CG  GCG  C     GG     C C R   C   R
Sbjct: 57  VKRQGGCGCCGCGCGCCGCGGGGGGGCGCCCCRPKCCCCCR 97


>U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 7 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
           RG+AF+ + ++ +   A    DG  +DG+ L V
Sbjct: 144 RGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVV 176


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 92   ISILFKMSYGRPPPRIDGMVSLKVDNL 172
            I ++F ++ G PPP IDG + + +D L
Sbjct: 1238 IYMMFNVNQGGPPPVIDGYLEITLDCL 1264


>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
           protein Y67D8C.9 protein.
          Length = 1073

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 241 HSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 354
           H  RS+ ++ +  A VR+   R AE+     D  + DG
Sbjct: 604 HEYRSFLKDRKASASVRYRGSRSAEDGSTLFDDALFDG 641


>AC024875-3|AAK29989.1|  496|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform a protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           S+G+AF  + +    ++A+  ++G  L  ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366


>AC024875-2|AAM44400.1|  471|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform d protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           S+G+AF  + +    ++A+  ++G  L  ++L VQ+A
Sbjct: 305 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 341


>AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform c protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
           S+G+AF  + +    ++A+  ++G  L  ++L VQ+A
Sbjct: 308 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 344


>Z36752-6|CAA85327.1|  456|Caenorhabditis elegans Hypothetical
           protein F35H8.5 protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDG 354
           S+G  FVRF ++ +A+ A+ T++G +  G
Sbjct: 168 SKGVGFVRFDKKDEADVAIKTLNGSIPSG 196


>U80455-2|AAB37882.2|  420|Caenorhabditis elegans Elav-type rna
           binding protein familyprotein 1, isoform b protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
           T  S+ F FV +   + A  A+  M+G  +  + L+VQ+
Sbjct: 372 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,942,877
Number of Sequences: 27780
Number of extensions: 258029
Number of successful extensions: 817
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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