Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120789.seq
         (623 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41430 Cluster: Uncharacterized 36.6 kDa protein in EGT...   116   6e-25
UniRef50_P41431 Cluster: Uncharacterized 14.6 kDa protein in EGT...    76   6e-13
UniRef50_A5K3Y7 Cluster: Methionine-tRNA ligase, putative; n=6; ...    34   2.4  
UniRef50_Q11TN9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.2  
UniRef50_Q22C90 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_UPI00006CC37C Cluster: hypothetical protein TTHERM_0058...    32   9.7  
UniRef50_Q53WL7 Cluster: Putative uncharacterized protein OSJNBa...    32   9.7  
UniRef50_Q9NGT0 Cluster: Glutamate dehydrogenase; n=2; Plasmodiu...    32   9.7  

>UniRef50_P41430 Cluster: Uncharacterized 36.6 kDa protein in
           EGT-IAP1 intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 36.6 kDa
           protein in EGT-IAP1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 316

 Score =  116 bits (278), Expect = 6e-25
 Identities = 56/68 (82%), Positives = 59/68 (86%)
 Frame = +2

Query: 230 QPAKAGKSESGEDQQLVPYNNNNGAAFNVKHDETGVMCYFTPSSVQLEPRELTKMLWQEQ 409
           QP K  +SE GEDQQLVPYN+    AFNVKHDETGVMCYFTPSS+QLEP ELTKMLWQEQ
Sbjct: 18  QP-KRERSEGGEDQQLVPYNSG---AFNVKHDETGVMCYFTPSSIQLEPHELTKMLWQEQ 73

Query: 410 MAINVKRG 433
           MAINVKRG
Sbjct: 74  MAINVKRG 81



 Score = 92.3 bits (219), Expect = 9e-18
 Identities = 47/64 (73%), Positives = 48/64 (75%)
 Frame = +3

Query: 432 GNFSILNCSCFEGRFLKNEFCRLG*LNSLHEWGRQXXXXXXIKNIVVLEPANGKTTVHPS 611
           GNFSILNCSCFEGRFLKNEFCRL  LNSLHEW          KNIVVLEPANGKTT +  
Sbjct: 81  GNFSILNCSCFEGRFLKNEFCRLSNLNSLHEW-EDKLYPEPDKNIVVLEPANGKTT-YTI 138

Query: 612 VPRV 623
            PRV
Sbjct: 139 GPRV 142



 Score = 41.9 bits (94), Expect = 0.012
 Identities = 21/23 (91%), Positives = 21/23 (91%), Gaps = 2/23 (8%)
 Frame = +3

Query: 189 MATKRKIGD--SSSDDNQPKRER 251
           MATKRKIGD  SSSDDNQPKRER
Sbjct: 1   MATKRKIGDGYSSSDDNQPKRER 23


>UniRef50_P41431 Cluster: Uncharacterized 14.6 kDa protein in
           EGT-IAP1 intergenic region; n=12;
           Nucleopolyhedrovirus|Rep: Uncharacterized 14.6 kDa
           protein in EGT-IAP1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 129

 Score = 76.2 bits (179), Expect = 6e-13
 Identities = 34/37 (91%), Positives = 34/37 (91%)
 Frame = -1

Query: 113 MDGSVVSMCVDNAFAYTTDDLLKNISFSHSKCAPFKL 3
           MD SV SMCVDNAFAYTTDDLLKNI FSHSKCAPFKL
Sbjct: 1   MDDSVASMCVDNAFAYTTDDLLKNIPFSHSKCAPFKL 37


>UniRef50_A5K3Y7 Cluster: Methionine-tRNA ligase, putative; n=6;
           Plasmodium|Rep: Methionine-tRNA ligase, putative -
           Plasmodium vivax
          Length = 405

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = -2

Query: 493 QNSFFKNLPSKQLQFSIEKLPSFHINRHLLLPQ---HLCQLAWLQLNG 359
           +N     LP K L F  EK P FHI  HLL+     H     WL   G
Sbjct: 346 ENMDVNKLPDKTLSFDKEKNPFFHIQPHLLVKNGVAHYKDAKWLSSKG 393


>UniRef50_Q11TN9 Cluster: Putative uncharacterized protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Putative
           uncharacterized protein - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 180

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 230 QPAKAGKSESGEDQQLVPYNNNNGA-AFNVKHDET 331
           +P  A K +S  D  L+ ++N+ G  AFN+KHD+T
Sbjct: 33  KPIPAVKIKSAHDHDLITFSNDTGYFAFNLKHDDT 67


>UniRef50_Q22C90 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1007

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 513  YSISPVDKIRFSKICLRNNYNSVLKSCP-RFTLIAICSCHNIFVNSR 376
            YS++   + RF  + L  NYN+V+ S    FTL+ I  C N  + S+
Sbjct: 955  YSVNFTPQGRFDTLPLDFNYNAVINSIAIGFTLVLISKCFNFIIQSK 1001


>UniRef50_UPI00006CC37C Cluster: hypothetical protein
           TTHERM_00588890; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00588890 - Tetrahymena
           thermophila SB210
          Length = 1566

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 203 QDWRFEQRRQPAKAGKSESGEDQQLVPYNNNNGAAFNVKHDET 331
           QD+    +RQPA   K +S +  Q +  NNNN  A  + +  T
Sbjct: 37  QDYSQNMQRQPANPNKYQSNQVSQYIQNNNNNNFAPTLTNQRT 79


>UniRef50_Q53WL7 Cluster: Putative uncharacterized protein
           OSJNBa0052K01.4; n=4; Oryza sativa|Rep: Putative
           uncharacterized protein OSJNBa0052K01.4 - Oryza sativa
           subsp. japonica (Rice)
          Length = 408

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -1

Query: 239 WLVVVAARIANLAFSCHATDVRCLLWFKSN*SVSQNIRYIINMDGSVVSMCVDNAFAYTT 60
           WL++       L FSC  ++ R   +F    S ++  RY  + DG+ + + VD   A   
Sbjct: 62  WLLLPETNEHGLTFSCVLSECRAHRFFLP--SGARRARYFGSYDGAWLFLAVDGRGAQAQ 119

Query: 59  DDLLKNIS 36
           D LL N++
Sbjct: 120 DHLLVNLN 127


>UniRef50_Q9NGT0 Cluster: Glutamate dehydrogenase; n=2; Plasmodium
            falciparum|Rep: Glutamate dehydrogenase - Plasmodium
            falciparum
          Length = 1378

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 239  KAGKSESGE--DQQLVPYNNNNGAAFNVKHDETGVMCYFTPSSVQLEPRELTKMLWQEQM 412
            K G++ +GE  D  +  +NNNN    N+  DE    CY     V     +  KM+ QE+M
Sbjct: 838  KGGRNNNGEEKDGDMNGHNNNNNDNNNIDDDEHIEECYKGAGCVINGENKTRKMILQEKM 897


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,625,989
Number of Sequences: 1657284
Number of extensions: 10963712
Number of successful extensions: 30742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30728
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)