Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120789.seq
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    27   1.7  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    26   3.8  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   6.7  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.9  

>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 531 FPIRANYSISPVDKIRFSKICLRNN 457
           FP+  + SI P+  + F K+C+R+N
Sbjct: 89  FPLPFSRSILPIRSLAFLKLCVRHN 113


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 192 ATKRKIGDSSSDDNQPKRE 248
           A+KRKI  SSSDD++ K E
Sbjct: 131 ASKRKIARSSSDDSESKVE 149


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 284 YNNNNGAAFNVKHDETG--VMCYFTPSSVQLE 373
           ++NN+    N+KH E G  +  Y TP   +LE
Sbjct: 61  FHNNHSVILNIKHPELGEPLKPYQTPLPPELE 92


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 412 HLLLPQHLCQLAWLQLNGRRR 350
           H+++PQ   Q +W+  +GR R
Sbjct: 330 HVVIPQDAQQSSWISFDGRNR 350


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 198 KRKIGDSSSDDNQPKRERVKVVR 266
           KRK  +S  +DN+ K ++ KV R
Sbjct: 638 KRKRSESDVEDNEAKEKQAKVAR 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,244
Number of Sequences: 5004
Number of extensions: 48094
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)