Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120789.seq
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0222 + 26510472-26511698                                         32   0.32 
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774...    32   0.43 
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062...    31   0.98 
06_02_0287 + 13814192-13814203,13814335-13814712,13816302-13816361     28   5.2  
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    28   6.9  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    28   6.9  

>05_06_0222 + 26510472-26511698
          Length = 408

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -1

Query: 239 WLVVVAARIANLAFSCHATDVRCLLWFKSN*SVSQNIRYIINMDGSVVSMCVDNAFAYTT 60
           WL++       L FSC  ++ R   +F    S ++  RY  + DG+ + + VD   A   
Sbjct: 62  WLLLPETNEHGLTFSCVLSECRAHRFFLP--SGARRARYFGSYDGAWLFLAVDGRGAQAQ 119

Query: 59  DDLLKNIS 36
           D LL N++
Sbjct: 120 DHLLVNLN 127


>06_01_0996 +
           7746358-7746493,7747102-7747262,7747586-7747647,
           7748142-7748595,7748994-7749134,7749444-7749633,
           7749842-7750530,7750605-7750804,7751210-7751375,
           7751850-7752046,7752162-7752396
          Length = 876

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 159 EP-QQTAHVGSMATKRKIGDSSSDDNQ---PKRERVKVVRTSSWC 281
           EP ++T  V   A KR IGD  +DD +   PKR R K  R +  C
Sbjct: 63  EPSKKTRGVSQRAKKRSIGDDHADDTEQPPPKRSRSKATRWNVSC 107


>07_03_0572 -
           19604643-19604745,19604947-19605629,19605786-19606284,
           19606370-19606878,19607110-19607148,19607347-19607411,
           19609081-19609201,19610229-19610315,19611096-19611179,
           19611925-19612175,19612869-19612962,19613043-19613284,
           19614187-19614505
          Length = 1031

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 218 EQRRQPAKAGKSESGEDQQLVPYNNNNGAAFNVKHD-ETGVMCYFTPSSVQ 367
           E+RR   K G S   + Q ++  +N+NG   N +HD E G    F+ + V+
Sbjct: 798 ERRRHSKKNGFSYRSQAQNVIRKSNSNGIVENNEHDPENGYAEQFSKNGVE 848


>06_02_0287 + 13814192-13814203,13814335-13814712,13816302-13816361
          Length = 149

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
 Frame = +3

Query: 159 EPQQTAHVGSMATKRKIGDSSSDDN---------QPKRERVKVVRTSSW 278
           E  Q   VG+  TKRK+GD + D++          PKR +++ V  S W
Sbjct: 91  EMMQWRAVGAYGTKRKVGDKAVDEDLYKVPQPLIYPKRRKMRKVVWSLW 139


>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 450 NCSCFEGRFLKNEFC 494
           +CSC+ G ++KN FC
Sbjct: 83  DCSCYPGSYMKNGFC 97


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +3

Query: 159 EPQQTAHVGSM-ATKRKIGDSSSDDNQ---PKRERVK 257
           EP +    GS  A KR IGD  +DD +   PKR R K
Sbjct: 140 EPSEKTRGGSQRAKKRSIGDDHADDIEEPPPKRSRSK 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,900,447
Number of Sequences: 37544
Number of extensions: 301064
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)