Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120789.seq
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23676| Best HMM Match : DUF904 (HMM E-Value=0.44)                   30   1.3  
SB_22394| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-38)                 30   1.8  
SB_44831| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)                   29   2.3  
SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_10606| Best HMM Match : I-set (HMM E-Value=0)                       28   5.4  

>SB_23676| Best HMM Match : DUF904 (HMM E-Value=0.44)
          Length = 591

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 203 QDWRFEQRRQPAKAGKSESGEDQQLVPYNNNNGAAFNVKHDETGVMCYFTPSSVQ 367
           QDW  EQ     +A +++   D+    Y+  +  A N+K  E  +  Y+ PSS Q
Sbjct: 58  QDWLAEQYNNKVRADENDKETDEAFRLYSQTHPDAGNLKEPE--LSDYYRPSSSQ 110


>SB_22394| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-38)
          Length = 401

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 344 YFTPSSVQLEPRELTKML-WQEQMAINVKRGQLF 442
           YFT +S +L+P ELT +   +E   + V RG +F
Sbjct: 10  YFTNNSTELQPNELTSVTQLREPFGLKVFRGMIF 43


>SB_44831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 203 QDWRFEQRRQPAKAGKSESGEDQQLVPYNNNNGAAFNVKHDETGVMCYFTPSSVQ 367
           QDW  EQ     +A +++   D+    Y+  +  A N+K  E  +  Y+ PSS Q
Sbjct: 104 QDWLAEQYNNKVRADENDKETDEAFRLYSQTHPDAGNLKEPE--LSDYYRPSSNQ 156


>SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 480 SKICLRNN--YNSVLKSCPRFTLIAICSCHNIFV 385
           S  CLR N   NS+++S P   ++A+C  H IF+
Sbjct: 278 SACCLRCNRLLNSIIQSLPDTDVLALCVTHFIFI 311


>SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)
          Length = 274

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -2

Query: 496 RQNSFFKNLPSKQLQFSIEKLPSFHINRHLLLPQHLCQLAWLQLNGRRRKIAHY 335
           +Q+    N   KQ++ S E   S  +  ++L P H     W+  +G    +AHY
Sbjct: 54  KQDHSICNSLIKQIKSSSESNQSLQLFENILCPSHPESPVWVTASGSDHPLAHY 107


>SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
 Frame = -3

Query: 555 SXSXIQLVFPIRANYSISPVDKIRFSKICLRNNYNS-------VLKSCPRFTLIAICSCH 397
           S S ++ V      YS S V  ++F  + + + Y          +KSC  FT++A+CS H
Sbjct: 8   STSIVKPVMSYTVAYSTSIVKSVQFYTVGMDSYYYHGTPSPYYTVKSCLYFTIVALCSPH 67


>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
          Length = 872

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 230 VVAARIANLAFSCHATD--VRCLLWFKSN*SVSQNIRYIINMDGSVV 96
           + A     + F C+AT   +  ++W K    +    R++IN DGS+V
Sbjct: 572 ITALTNTQVTFRCNATGTPMPSVIWTKDGQVLVSGPRHVINKDGSIV 618


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,566,741
Number of Sequences: 59808
Number of extensions: 357266
Number of successful extensions: 968
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)