Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120789.seq
         (623 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ780943-1|ABH07113.1|  910|Drosophila melanogaster prominin pro...    28   8.9  
BT029279-1|ABK30916.1| 1066|Drosophila melanogaster IP13255p pro...    28   8.9  
AE013599-3867|AAM68313.1|  670|Drosophila melanogaster CG30164-P...    28   8.9  

>DQ780943-1|ABH07113.1|  910|Drosophila melanogaster prominin
           protein.
          Length = 910

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 238 GWLSSLLESPILRLVAMLPTCAVCCG--SSLIEVFH 137
           G+++ +    IL LV ++ TCA CCG  S+  EV H
Sbjct: 121 GFIALMSVFAILALVPLIATCAWCCGRRSTQEEVDH 156


>BT029279-1|ABK30916.1| 1066|Drosophila melanogaster IP13255p
           protein.
          Length = 1066

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 238 GWLSSLLESPILRLVAMLPTCAVCCG--SSLIEVFH 137
           G+++ +    IL LV ++ TCA CCG  S+  EV H
Sbjct: 122 GFIALMSVFAILALVPLIATCAWCCGRRSTQEEVDH 157


>AE013599-3867|AAM68313.1|  670|Drosophila melanogaster CG30164-PA
           protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 238 GWLSSLLESPILRLVAMLPTCAVCCG--SSLIEVFH 137
           G+++ +    IL LV ++ TCA CCG  S+  EV H
Sbjct: 34  GFIALMSVFAILALVPLIATCAWCCGRRSTQEEVDH 69


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,489,309
Number of Sequences: 53049
Number of extensions: 515296
Number of successful extensions: 1852
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1852
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)