Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120789.seq
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop heli...    27   8.2  
AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.      27   8.2  

>U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical
           protein T05E8.1 protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 198 KRKIGDSSSDDNQPKRER 251
           K K GDSSSDD+ P+R+R
Sbjct: 13  KFKRGDSSSDDSGPERDR 30


>U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop helix
           protein 8 protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 581 RLQHHDIFNRARGYNLSSPF 522
           +L  H IF+  RGYNL S F
Sbjct: 80  KLYGHSIFDEKRGYNLQSAF 99


>AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 581 RLQHHDIFNRARGYNLSSPF 522
           +L  H IF+  RGYNL S F
Sbjct: 80  KLYGHSIFDEKRGYNLQSAF 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,737,583
Number of Sequences: 27780
Number of extensions: 270996
Number of successful extensions: 765
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)