Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120789.seq
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29780.1 68417.m04241 expressed protein                             31   0.47 
At3g19870.1 68416.m02516 expressed protein                             29   1.9  
At3g53540.1 68416.m05912 expressed protein                             27   7.7  

>At4g29780.1 68417.m04241 expressed protein
          Length = 540

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 146 SVSQNIRYIINMDGSVVSMCVDNAFAYTTDDLLKNISFSHSKCA 15
           S S  ++ ++N DG    +C+ N  + T D +L+  S S  + A
Sbjct: 357 SYSITVQGVVNADGIFTDVCIGNPGSLTDDQILEKSSLSRQRAA 400


>At3g19870.1 68416.m02516 expressed protein 
          Length = 1117

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 353 PSSVQLEPRELTKMLWQEQMAINVKRGQLFNTEL 454
           P +V+LEPRE T  L +  M  N + GQ+   +L
Sbjct: 871 PVTVELEPREPTPGLVEVSMEANAENGQMIQGKL 904


>At3g53540.1 68416.m05912 expressed protein
          Length = 924

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 251 SESGEDQQLVPYNNNNGAAFNVKHDETGVMCYFTPSSVQLEPRELTKMLWQ 403
           S+S  + +LVP  +    AFN ++    +    T SSV  E +      W+
Sbjct: 408 SDSASESELVPVTSGTRTAFNRRNYHRSLPSKSTTSSVSREAKRRLSERWK 458


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,927
Number of Sequences: 28952
Number of extensions: 246837
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)