Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120788.seq
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     28   1.2  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   8.2  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    25   8.2  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -3

Query: 288 CERW*FYIINRLFKK----SILFGTAAGRFKRCCRQF 190
           C++W +Y +NR+F +    S L G +A +++   + F
Sbjct: 256 CKKWAYYSLNRIFTRYGEPSSLVGDSANKYRAFAKNF 292


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 413 YCFLVLELGQVYGFGQDHTWLAAVPARRFSWGFL 514
           Y  L +ELGQ  G G DH  L       +S G +
Sbjct: 835 YDDLCIELGQKLGIGADHIRLTTCNPLTYSAGMV 868


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 503 KKIDVQEQLPAMCGLAQSHKPAPVP 429
           ++I +QE+L A    A S +PAPVP
Sbjct: 319 QQISLQERLHAKQDEAPSDEPAPVP 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,866
Number of Sequences: 5004
Number of extensions: 43766
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)