Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120788.seq
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_58206| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 271 KLPPFTRDNVLYYYIPMQGLASYTTLSVSVMNPHLMVRLFPQRDITD 411
           K+PP + D ++Y    ++   S   L V + NPH+ +  FP    TD
Sbjct: 373 KIPPDSID-IIYRQWQLKLALSSLILQVMLSNPHISIVFFPILIFTD 418


>SB_58206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 527 RDNHLKSPKKIDVQEQLPAMCGLAQSH 447
           R +++++PKK+  +E   A+ GLA+ H
Sbjct: 421 RGDYIQAPKKVIDEEDFQAVSGLAKEH 447


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,678,439
Number of Sequences: 59808
Number of extensions: 328449
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)