Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120788.seq
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22350.1 68416.m02822 F-box family protein similar to F-box p...    29   1.7  
At3g22720.1 68416.m02866 F-box family protein similar to F-box p...    27   7.0  

>At3g22350.1 68416.m02822 F-box family protein similar to F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; contains Pfam PF00646: F-box domain; contains
           TIGRFAM TIGR01640 : F-box protein interaction domain
          Length = 378

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +2

Query: 161 NMDILEKVYRNCRQHLLNLPAAVPKSIDFXXXXXXXXXYHLSQGTMYFIITYQCKGLLV 337
           +M ++ K YR C  ++ NL  + P S++F          H + G +  +  Y C GLL+
Sbjct: 52  SMVLMLKEYRVCSMNI-NLNVS-PPSVEFQGTLGIKDDSHSNLGQVEIVEVYHCDGLLL 108


>At3g22720.1 68416.m02866 F-box family protein similar to F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; contains Pfam PF00646: F-box domain; contains
           TIGRFAM TIGR01640 : F-box protein interaction domain
          Length = 378

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 451 LWARPHMAGSCSCTSIFLGLF 513
           LW R H+   C+C  IF  L+
Sbjct: 288 LWKRVHLDSQCNCVRIFSSLY 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,717,165
Number of Sequences: 28952
Number of extensions: 228478
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)