Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120786.seq
         (589 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24730 Cluster: Uncharacterized 25.1 kDa protein in PP3...   177   1e-43
UniRef50_O02181 Cluster: Putative uncharacterized protein; n=1; ...    38   0.17 
UniRef50_Q6VTL2 Cluster: Putative uncharacterized protein; n=2; ...    38   0.23 
UniRef50_A0YKJ9 Cluster: Putative uncharacterized protein; n=1; ...    33   3.7  

>UniRef50_P24730 Cluster: Uncharacterized 25.1 kDa protein in
           PP34-EXO intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 25.1 kDa
           protein in PP34-EXO intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 219

 Score =  177 bits (432), Expect = 1e-43
 Identities = 101/176 (57%), Positives = 105/176 (59%)
 Frame = +3

Query: 3   PTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGESAVFQX 182
           PTKK G HAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQN GESAVFQ 
Sbjct: 6   PTKKGGSHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNPGESAVFQE 65

Query: 183 XXXXXXXXXXXXXXQKRXXXXXXXXXXXXXXXXXXRHIPWPILSIPITNXN*NVPESQAX 362
                         QKR                     P                  ++ 
Sbjct: 66  LERLENAVVVLENEQKRLYPILDTPLDNFIVAFVNPTYPMAYFVNTDYKLKLECARIRSD 125

Query: 363 YFTXTKTKSAINRPKISXFKLQLNDVILDTIETIEYDLQNKVLTITAPVXDSRTXK 530
                K + AINRPKIS FKLQLN+VILDTIETIEYDLQNKVLTITAPV D    K
Sbjct: 126 LLYKNKNEVAINRPKISSFKLQLNNVILDTIETIEYDLQNKVLTITAPVQDQELRK 181



 Score = 83.0 bits (196), Expect = 5e-15
 Identities = 38/44 (86%), Positives = 38/44 (86%)
 Frame = +2

Query: 257 LDNFIVAFVNPTYPXAYFVNTDYKXXLECARITSXLLYXNKNEV 388
           LDNFIVAFVNPTYP AYFVNTDYK  LECARI S LLY NKNEV
Sbjct: 91  LDNFIVAFVNPTYPMAYFVNTDYKLKLECARIRSDLLYKNKNEV 134



 Score = 42.7 bits (96), Expect = 0.006
 Identities = 21/28 (75%), Positives = 21/28 (75%)
 Frame = +1

Query: 505 PFXIQELXKSIIYLNILNSSDRWEVPKY 588
           P   QEL KSIIY NILN SD WEVPKY
Sbjct: 173 PVQDQELRKSIIYFNILN-SDSWEVPKY 199


>UniRef50_O02181 Cluster: Putative uncharacterized protein; n=1;
           Choristoneura fumiferana MNPV|Rep: Putative
           uncharacterized protein - Choristoneura fumiferana
           nuclear polyhedrosis virus (CfMNPV)
          Length = 226

 Score = 37.9 bits (84), Expect = 0.17
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +2

Query: 266 FIVAFVNPTYPXAY--FVNTDYKXXLECARITSXLLYXNKNE 385
           F+VAF +PTYP  Y    NT+Y   + C +I + LL+ +KN+
Sbjct: 94  FVVAFAHPTYPMEYNKISNTNY-LKIYCMKINTDLLFKDKNQ 134


>UniRef50_Q6VTL2 Cluster: Putative uncharacterized protein; n=2;
           Nucleopolyhedrovirus|Rep: Putative uncharacterized
           protein - Choristoneura fumiferana defective
           polyhedrosis virus (Cfdef)
          Length = 219

 Score = 37.5 bits (83), Expect = 0.23
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 260 DNFIVAFVNPTYPXAYFVNTDYKXXLECARITSXLLYXNKNE 385
           + F+VAF +PTYP  Y  N      + C++I   LL+ +KN+
Sbjct: 87  NTFVVAFAHPTYPMDYIRNAT-SITINCSKINRKLLFFDKNK 127


>UniRef50_A0YKJ9 Cluster: Putative uncharacterized protein; n=1;
           Lyngbya sp. PCC 8106|Rep: Putative uncharacterized
           protein - Lyngbya sp. PCC 8106
          Length = 1015

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 3   PTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTA 134
           P  KSG   ++  E  V +PP  S K Q++ + I + +T++TT+
Sbjct: 729 PPTKSGLDVISTEETAVIEPPSTSVKHQEFDQKIPSAETVQTTS 772


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,052,689
Number of Sequences: 1657284
Number of extensions: 8254549
Number of successful extensions: 18724
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18722
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)