Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120786.seq
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42027| Best HMM Match : CorA (HMM E-Value=0.65)                     28   4.9  
SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)            28   6.5  
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)                   27   8.6  

>SB_42027| Best HMM Match : CorA (HMM E-Value=0.65)
          Length = 369

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 110 GSDSFLVLLQLFRLFWGFCYAAL 42
           GS   ++L+ +F +FWG C+  L
Sbjct: 314 GSTLMMILILIFGMFWGACFGIL 336


>SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
          Length = 1347

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 239  SHIKYALDNFIVAFVNPTYPXAYFVNTDYKXXLE 340
            +H   A DN+++  ++P YP   F+NTD    LE
Sbjct: 1158 THASQADDNWLIQALDPCYP-VVFLNTDKVPALE 1190


>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
          Length = 711

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 101 YRCRANAAHHSRCFFFAEPRGECRFSRVGK 190
           YR R+    H  C F  +    C F ++GK
Sbjct: 614 YRLRSRRLRHLTCCFIEDVTSSCAFVQIGK 643


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,926,534
Number of Sequences: 59808
Number of extensions: 279271
Number of successful extensions: 737
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)