Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120786.seq
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical...    31   0.80 
L25598-1|AAA27942.1|  129|Caenorhabditis elegans Hypothetical pr...    29   3.2  

>AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.1 protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 101 YRCRANAAHHSRCFFFAEPRGECRFSR 181
           + CRA AA   RC F  E R  CR S+
Sbjct: 49  FSCRACAAFFRRCHFLKENRRRCRLSK 75


>L25598-1|AAA27942.1|  129|Caenorhabditis elegans Hypothetical
           protein C06G4.4 protein.
          Length = 129

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 51  VTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGESAV 173
           +++ PK+SEK   YKKA+A ++ ++    +      G+  V
Sbjct: 1   MSEAPKRSEKSADYKKAVAKQRRIKKLRKMKIKDRAGDVVV 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,924,888
Number of Sequences: 27780
Number of extensions: 212045
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)