Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120786.seq
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41760.1 68415.m05162 expressed protein                             29   1.7  
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,...    27   9.3  
At1g58200.2 68414.m06607 mechanosensitive ion channel domain-con...    27   9.3  
At1g58200.1 68414.m06606 mechanosensitive ion channel domain-con...    27   9.3  

>At2g41760.1 68415.m05162 expressed protein
          Length = 221

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -1

Query: 163 SPWFCKEETSAVVRSVCSAAIAFLYCCNFSDFFGGFVTPRSRNVMAW 23
           +P++C+E    + +++C   +A   C   SD F  F++   + V  W
Sbjct: 19  TPYYCEENVYLLCKTLCENGVAEATC---SDLFVVFISNEKKQVPLW 62


>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
           putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
           amidohydrolase) {Canavalia ensiformis}; contains Pfam
           profile PF01979: Amidohydrolase family
          Length = 838

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/54 (22%), Positives = 22/54 (40%)
 Frame = -1

Query: 169 ALSPWFCKEETSAVVRSVCSAAIAFLYCCNFSDFFGGFVTPRSRNVMAWPPLFF 8
           A+ P    ++ S + R +    I       F+D  G     +  +++ W P FF
Sbjct: 658 AIDPNMADDDNSRIKRYIAKYTINPAIANGFADLIGSVEVKKLADLVIWQPAFF 711


>At1g58200.2 68414.m06607 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 678

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 63  PKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGES 167
           P K+EK +        EQTL++ A   S +N+GES
Sbjct: 590 PHKAEKDEVSDDEATIEQTLKSKAKQGSEKNNGES 624


>At1g58200.1 68414.m06606 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 678

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 63  PKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGES 167
           P K+EK +        EQTL++ A   S +N+GES
Sbjct: 590 PHKAEKDEVSDDEATIEQTLKSKAKQGSEKNNGES 624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,945,853
Number of Sequences: 28952
Number of extensions: 184056
Number of successful extensions: 430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)