Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120784.seq
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.33
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 29 0.57
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.3
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 3.0
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 26 4.0
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 26 4.0
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 26 5.3
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 5.3
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.3
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 26 5.3
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 7.0
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 7.0
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +3
Query: 264 AFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 443
AF H F ++ + N +E N + P+L T+ L +D P ++++ +
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437
Query: 444 FDTEALVNF 470
+T ++NF
Sbjct: 1438 ENTPLILNF 1446
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 29.1 bits (62), Expect = 0.57
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 456 ALVNFENDNCNVRIAKTLAPLSAKTRRAIDYESNKQPDYDMDLSDFSI 599
+L NF++DNC ++ +L + R + S D+DL +++
Sbjct: 223 SLANFQSDNCKLKSHNSLPSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = -2
Query: 478 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 305
S S +++SV + I + GLS ++ + + + +G+P +S VSVT N ++
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236
Query: 304 KLVTSGW---NLLCI 269
+ T+GW N C+
Sbjct: 237 TVNTNGWTSSNFKCV 251
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 356 GNACVISFSDHKLHFVSKISNK 291
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 4 HEVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSL 117
H VK TVT + + E I T LA+ NL+SL
Sbjct: 162 HSVKSTSSATVTNVTSKKEAISATTSLAQ-SSPNLASL 198
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 447 DTEALVNFENDN--CNVRIAKTLAPLSAKTRRAIDYESNKQP 566
D +AL+NFEND+ R + P+ A+ + + + + K P
Sbjct: 48 DKDALLNFENDSEAEQTRFEQNFPPIDAEMQASGTFSAPKAP 89
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +3
Query: 264 AFIHNRFHPLV---TNFTNKMEFVVTETNDTS 350
AFI N++ PLV T++TN V +TN S
Sbjct: 112 AFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 359 SGNACVISFSDHKLHFVSKISNKW 288
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 502 LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 386
L I+ QLSFS+ S + SRL +T+ + TP
Sbjct: 889 LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 477 DNCNVRIAKTLAPLSAKTRRAIDYESNKQP 566
D+CN+ + + LS +TRR S+K P
Sbjct: 302 DSCNLVVGMSNGTLSQRTRRITKQTSSKTP 331
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 319 SILLVKLVTSGWNLLCIKANV 257
S +L L+ GW ++C ANV
Sbjct: 19 SCILAWLIEEGWEVICYMANV 39
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 7.0
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 4 HEVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTL 183
H N V+ +TE D +Q E +EFD + E ++I +L KY A L
Sbjct: 1632 HTTIRNFVQKITENAEFDLALQLLAEASEFDDLAIRHNEDLINIEINKSL-KYSAACLNL 1690
Query: 184 EMTQPLLEIF 213
M ++ F
Sbjct: 1691 PMVDAHVKAF 1700
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,093
Number of Sequences: 5004
Number of extensions: 51083
Number of successful extensions: 162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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