Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120784.seq
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0757 + 24267599-24268882                                         29   3.1  
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660...    28   5.5  
10_07_0161 - 13674631-13675433,13675793-13675862                       28   7.2  
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    28   7.2  
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554...    27   9.6  

>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 143 NWRSANTWLCSAPWK*PSRCWK 208
           +WR A  W+C  PW    + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
            13266361-13266623,13267637-13267847,13268420-13268590,
            13268671-13268748,13269275-13269520,13269763-13271868,
            13272122-13273904,13274113-13274216,13274752-13275108,
            13275210-13275328,13276175-13276436,13276669-13276893,
            13277075-13277214,13278087-13278159,13278431-13278532,
            13278647-13279018,13279183-13279230,13279516-13279900,
            13280440-13280558
          Length = 2574

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +3

Query: 411  RPSIVKMLSREFDTEALVNFENDNCNVRIAKTLAPLSAKTRRAIDYESNKQPDYDMDLS 587
            R S+VK L +E     LVN  N    V     +A   A   R ++ E NK P + M +S
Sbjct: 2084 RASLVKCLKKE-----LVNVRNGRKEVSSMLRVAMHKAAQARLMEKEKNKSPSFAMRVS 2137


>10_07_0161 - 13674631-13675433,13675793-13675862
          Length = 290

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 143 NWRSANTWLCSAPWK*PSRCWK 208
           +WR A  W+C  PW      W+
Sbjct: 229 SWRPAGPWVCFNPWPAQQLAWR 250


>03_02_0870 +
           11964135-11964224,11965013-11965175,11965262-11965380,
           11965971-11966083,11966179-11966234,11966320-11966417,
           11966588-11966725,11966820-11967125,11967208-11967471,
           11967587-11967754,11967838-11968056,11968115-11968158,
           11968761-11968830,11968949-11969110,11969672-11969779,
           11969873-11969910,11970121-11970265,11970800-11970926,
           11971037-11971230,11971529-11971659,11972014-11972089,
           11972218-11972328,11972465-11972647,11973264-11973407,
           11973946-11973969,11974555-11974728,11974808-11975155,
           11975232-11975561,11975776-11975961,11976052-11977026,
           11977145-11977399
          Length = 1852

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 37  TEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLE 207
           TE+  S+++  K  E+ E D+ + S  + YET ++  + SK    LS L   +P  +
Sbjct: 84  TELQLSNDRQSKPDEVTEDDMPSTSGRQLYET-EVPASSSKKHCSLSPLPAYEPAFD 139


>05_06_0014 +
           24854462-24854570,24854958-24855065,24855240-24855432,
           24855892-24856150,24856236-24856292,24856370-24856417,
           24856725-24856811,24856885-24856942,24857084-24857151,
           24857279-24857374,24857483-24857539,24857906-24857952,
           24858184-24858210,24858312-24858504
          Length = 468

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 273 HNRFHPLVTNFTNKMEFVVTETNDTSIPG 359
           H  FH  + + TNK+E V++ T  + I G
Sbjct: 427 HRLFHHPIDDCTNKIEHVISRTEQSFISG 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,311,539
Number of Sequences: 37544
Number of extensions: 316879
Number of successful extensions: 801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)