Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120784.seq
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_24231| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.6  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   5.6  
SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)              28   7.4  
SB_30608| Best HMM Match : RFX1_trans_act (HMM E-Value=3.1)            27   9.8  
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = -2

Query: 496 IRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVN-KMGSPGMLVSLVSVTTN 320
           +  L  S  +F +   +NS    LT++ L  + + T + S    +G   ++VS+ SVTTN
Sbjct: 737 VTPLLFSQERFERFEHNNSLEIKLTVNILQNQGSRTMTSSYYLAIGILSIIVSITSVTTN 796

Query: 319 SILLVKLV 296
           S++LV ++
Sbjct: 797 SLILVVII 804


>SB_24231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 522 AKTRRAIDYESNKQPDYDMDLSDFSITEG 608
           A+T +A    S KQP YD   ++F+I EG
Sbjct: 20  AQTTKAGGTNSRKQPAYDTSRTEFNIDEG 48


>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 58  EKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 165
           +K +K + L + +LK L   E Y+ LK K  L KY+
Sbjct: 89  QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 330 TETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 437
           +E  D SI   P +   N G L+C VDR SI ++ S
Sbjct: 37  SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -2

Query: 496 IRTLQLSFSKFT--KASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTT 323
           I +++LS S  T   +S++ ++LS L+   LST   STPS S      P    +   V  
Sbjct: 183 IGSVELSSSAATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPS---TTWKVFR 239

Query: 322 NSILLVKLVTSG 287
             +LL + V  G
Sbjct: 240 TKVLLERSVKEG 251


>SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)
          Length = 227

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 19  NKVRTVTEIVNS-DEKIQKTYELAEFDLKNLSSLESY-ETLKIKLALSKYMAMLSTLEMT 192
           N V+ + E+    +EK  K Y+L    L+ L+ ++ Y ETL+    + K +    T +  
Sbjct: 104 NIVKDIAEVNKKIEEKKAKLYDLERRHLRALNKIDHYEETLRASEQIGKRVVTNYTPKSD 163

Query: 193 QPLLEIFRNKADTRQIAA 246
           Q   EI  +  D  + AA
Sbjct: 164 QEYQEIISDLRDGIKHAA 181


>SB_30608| Best HMM Match : RFX1_trans_act (HMM E-Value=3.1)
          Length = 476

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 445 NSRLSILTIDGLS-TEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILL 308
           NS+ +    D  S T H + PS+ V+  G  GM V + + TT S +L
Sbjct: 113 NSKPTQQVCDSFSLTPHTTLPSYVVSHAGLAGMRVRIPNCTTWSEIL 159


>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 94  DLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFR 216
           + KN+SS   Y T K K +L++ +   + + +  PL+E+FR
Sbjct: 275 ETKNMSSF--YWTKKYKKSLARSLREAAVIHLGVPLVELFR 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,108,652
Number of Sequences: 59808
Number of extensions: 369854
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)