Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120784.seq
         (641 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U19252-1|AAC50134.1| 1190|Homo sapiens protein ( Human putative ...    33   0.65 
U61520-1|AAB58468.1| 1259|Homo sapiens GT334 protein protein.          30   8.0  
U61500-1|AAC51826.1| 1259|Homo sapiens GT334 protein protein.          30   8.0  
BC101728-1|AAI01729.1| 1259|Homo sapiens transmembrane protein 1...    30   8.0  
AB001523-1|BAA21099.1| 1259|Homo sapiens TMEM1 protein.                30   8.0  

>U19252-1|AAC50134.1| 1190|Homo sapiens protein ( Human putative
            transmembrane protein mRNA, complete cds. ).
          Length = 1190

 Score = 33.5 bits (73), Expect = 0.65
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +3

Query: 291  LVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVL-LCSVDRPSIVKMLSREFDTEALVN 467
            L+     +++F VT  +DT   G+ +  +  E +L LC  +  ++V   +RE  +EA + 
Sbjct: 796  LLAGIPQRVKFTVTTGHDTIKNGDSLQLSNAEAMLILCQAESRAVVYSNTREQSSEAALR 855

Query: 468  FENDNCNVRIAKTLAP 515
             ++ +    I+  +AP
Sbjct: 856  IQSSDKVTSISLPVAP 871


>U61520-1|AAB58468.1| 1259|Homo sapiens GT334 protein protein.
          Length = 1259

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 291  LVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVL-LCSVDRPSIVKMLSREFDTEALVN 467
            L+     +++F VT  + T   G+ +  +  E +L LC  +  ++V   +RE  +EA + 
Sbjct: 796  LLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAEAMLILCQAESRAVVYSNTREQSSEAALR 855

Query: 468  FENDNCNVRIAKTLAP 515
             ++ +    I+  +AP
Sbjct: 856  IQSSDKVTSISLPVAP 871


>U61500-1|AAC51826.1| 1259|Homo sapiens GT334 protein protein.
          Length = 1259

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 291  LVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVL-LCSVDRPSIVKMLSREFDTEALVN 467
            L+     +++F VT  + T   G+ +  +  E +L LC  +  ++V   +RE  +EA + 
Sbjct: 796  LLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAEAMLILCQAESRAVVYSNTREQSSEAALR 855

Query: 468  FENDNCNVRIAKTLAP 515
             ++ +    I+  +AP
Sbjct: 856  IQSSDKVTSISLPVAP 871


>BC101728-1|AAI01729.1| 1259|Homo sapiens transmembrane protein 1
            protein.
          Length = 1259

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 291  LVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVL-LCSVDRPSIVKMLSREFDTEALVN 467
            L+     +++F VT  + T   G+ +  +  E +L LC  +  ++V   +RE  +EA + 
Sbjct: 796  LLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAEAMLILCQAESRAVVYSNTREQSSEAALR 855

Query: 468  FENDNCNVRIAKTLAP 515
             ++ +    I+  +AP
Sbjct: 856  IQSSDKVTSISLPVAP 871


>AB001523-1|BAA21099.1| 1259|Homo sapiens TMEM1 protein.
          Length = 1259

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 291  LVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVL-LCSVDRPSIVKMLSREFDTEALVN 467
            L+     +++F VT  + T   G+ +  +  E +L LC  +  ++V   +RE  +EA + 
Sbjct: 796  LLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAEAMLILCQAESRAVVYSNTREQSSEAALR 855

Query: 468  FENDNCNVRIAKTLAP 515
             ++ +    I+  +AP
Sbjct: 856  IQSSDKVTSISLPVAP 871


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,837,696
Number of Sequences: 237096
Number of extensions: 1745446
Number of successful extensions: 4479
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4479
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)