Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120784.seq
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     29   0.051
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    28   0.067
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.7  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 0.051
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +1

Query: 58  EKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEI 210
           E++++T E  E DL+     E  + L ++ +++KY+  L  +E T+P+L I
Sbjct: 74  EELRRT-EAFEVDLEFYLGKEWKKNLNLRDSVTKYLIHLKEIEDTEPILLI 123


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 421 IDGLSTEHNST-PSFSVNKMGSPGMLVSLVSVTTN 320
           +D +  EH +T P ++V ++  PG+ ++ + +TTN
Sbjct: 408 VDDVFQEHKNTLPQYTVQQLDFPGIEIADIKLTTN 442


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 206 SNSGWVISRVLSIAMYLLSANLIFRV 129
           +  G  +S VLS+++  L+++LIF +
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTI 35


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 206 SNSGWVISRVLSIAMYLLSANLIFRV 129
           +  G  +S VLS+++  L+++LIF +
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTI 35


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 206 SNSGWVISRVLSIAMYLLSANLIFRV 129
           +  G  +S VLS+++  L+++LIF +
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTI 35


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 206 SNSGWVISRVLSIAMYLLSANLIFRV 129
           +  G  +S VLS+++  L+++LIF +
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTI 35


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 270 IHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILF 374
           +   +   +  +T K+EFVV +      P  P +F
Sbjct: 387 LETEWSSFINPWTKKLEFVVGQHRILKGPANPDIF 421


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 270 IHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILF 374
           +   +   +  +T K+EFVV +      P  P +F
Sbjct: 93  LETEWSSFINPWTKKLEFVVGQHRILKGPANPDIF 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,474
Number of Sequences: 438
Number of extensions: 3302
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)