Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120784.seq
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29560.1 68417.m04215 expressed protein                             30   1.5  
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    29   2.0  
At1g77580.2 68414.m09032 myosin heavy chain-related low similari...    29   2.0  
At1g77580.1 68414.m09033 myosin heavy chain-related low similari...    29   2.0  
At4g11070.1 68417.m01798 WRKY family transcription factor other ...    29   2.6  
At5g49555.1 68418.m06133 amine oxidase-related contains Pfam pro...    28   4.6  
At3g42850.1 68416.m04489 galactokinase, putative contains some s...    28   6.1  
At1g77630.1 68414.m09038 peptidoglycan-binding LysM domain-conta...    28   6.1  
At1g03800.1 68414.m00361 ERF domain protein 10 (ERF10) identical...    28   6.1  
At2g37930.1 68415.m04656 expressed protein                             27   8.0  

>At4g29560.1 68417.m04215 expressed protein 
          Length = 493

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -2

Query: 451 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVKLVTSGWN 281
           +SN  L     D +    +S P +   K+GS G ++  + V+ + +    LV   WN
Sbjct: 135 ISNLDLDSADEDSMKQVFDSVPDWLSEKLGSAGTILPWLPVSCDDVDSEMLVVDSWN 191


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 407 DGAQQHPLVFCKQNGFSGNACVISFSDHKLHFVSKISNKW 288
           DG+   PL+        G  C++ F D  +HF S I+N++
Sbjct: 799 DGSSTSPLLDLFPTSSEG--CILVFDDSDMHFTSSIANRY 836


>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 779

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 4   HEVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLES-YETLKIKLALSKYMAMLST 180
           +EVKCN+   V  I NS+    +T EL E     L  LE+  E LK ++  ++  A++  
Sbjct: 371 NEVKCNREEAVVHIENSEVLTSRTKELEE----KLEKLEAEKEELKSEVKCNREKAVVHV 426

Query: 181 LEMTQPLLEIFRNK 222
                  +E+  ++
Sbjct: 427 ENSLAAEIEVLTSR 440


>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 629

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 4   HEVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLES-YETLKIKLALSKYMAMLST 180
           +EVKCN+   V  I NS+    +T EL E     L  LE+  E LK ++  ++  A++  
Sbjct: 337 NEVKCNREEAVVHIENSEVLTSRTKELEE----KLEKLEAEKEELKSEVKCNREKAVVHV 392

Query: 181 LEMTQPLLEIFRNK 222
                  +E+  ++
Sbjct: 393 ENSLAAEIEVLTSR 406


>At4g11070.1 68417.m01798 WRKY family transcription factor other
           putative proteins, Arabidopsis thaliana
          Length = 313

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 451 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLV-SLVSVTTN 320
           VS+ + +IL ++G +T+HN T   + + +  PG +  S  S+T N
Sbjct: 53  VSSFKKAILMLNGSTTQHNPTIELAPDPLAHPGKVPGSPASITGN 97


>At5g49555.1 68418.m06133 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 556

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -1

Query: 428 FNDRRSVDGAQQHPLVFCKQNGFS-GNACVISFSDHKLHFVSKISNKWMESIVYKS*CAN 252
           FND+ S    +      C +   S G+  +++F D  L   SK+ N W ES V K+  A 
Sbjct: 163 FNDKLSNKMYKSAFWARCLRQAVSLGHKDMVAFMDLLLAPASKVLNNWFESDVLKASLA- 221

Query: 251 TTAAICRVSALFLNISNSGWVI 186
           T A I   S   ++   SG+V+
Sbjct: 222 TDAVI--GSTASVHTPGSGYVL 241


>At3g42850.1 68416.m04489 galactokinase, putative contains some
           similarity to galactokinase [Pasteurella multocida]
           SWISS-PROT:P57899
          Length = 964

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 552 SNKQPDYDMDLSDFSITEG 608
           SN+ P +DMDLSDF   +G
Sbjct: 555 SNRGPTFDMDLSDFMEEDG 573


>At1g77630.1 68414.m09038 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 423

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 246 RGVSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPIL 371
           RG+ T+A I  RF   VT+ TN       + N   I   P+L
Sbjct: 178 RGIDTMAGIAKRFSTSVTDLTNVNAMGAPDINPGDILAVPLL 219


>At1g03800.1 68414.m00361 ERF domain protein 10 (ERF10) identical to
           ERF domain protein 10 GI:11414990 from [Arabidopsis
           thaliana]
          Length = 245

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 405 VDRPSIVKMLSREFDTEALVNFENDNCNVRIAKTLAPLSAKTRRAIDYESNKQPDYDMDL 584
           +D P ++  L  E D      FE+ +  + I    A    +T  A+D +   +PD D++ 
Sbjct: 185 LDLPEVIA-LKEELDRVCPDQFESIDMGLTIGPQTAVEEPETSSAVDCKLRMEPDLDLNA 243

Query: 585 S 587
           S
Sbjct: 244 S 244


>At2g37930.1 68415.m04656 expressed protein
          Length = 467

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 273 HNRFHPLVTNFTNKMEFVVTETNDTSI-PGEPILF 374
           H   HP V     +M+ V T T+D+SI   E +LF
Sbjct: 270 HKNEHPFVHTIIGEMKTVTTFTSDSSIHKSETVLF 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,404,182
Number of Sequences: 28952
Number of extensions: 260613
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)