Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120783.seq
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 28 1.3
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 27 2.3
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 27 2.3
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 27 3.0
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 27 3.0
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 27 3.0
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 27 3.0
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz... 26 4.0
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 5.3
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.3
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 7.0
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 7.0
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 9.3
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -2
Query: 210 IFKIGFLKHCSKRVVKRCVVGHIYNQFPPR*RTVLWRHFDFVAIQYLPSYRFPHI 46
+++ G+++ SKRV K V + N + W H D ++YLP +++ H+
Sbjct: 174 MYEEGWIEFESKRVAKS--VAELLNTNQIGGKKSSWYHDDIWNMKYLPKFKWHHL 226
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 528 TRRPRCWRKLLEIDKKFHVCRHVDTFLD 611
TR RC +L E +K+ +H+ +F+D
Sbjct: 442 TREERCKNQLREYEKQMEYRKHLQSFID 469
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +1
Query: 52 WESIRWQILNGDEIEVSPEHRSLAWRELIINVANN------TPLDNTFRTMFQKADF 204
++S++WQ + DE + S W+ L+ N TP+ NT + ++ F
Sbjct: 966 FQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHF 1022
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 534 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPG 629
R R KLL+++++F++ +DLC PG
Sbjct: 22 RARSAFKLLQLNEQFNLFEGAKRVVDLCAAPG 53
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -1
Query: 301 AGLLRAALILSLYIVKFLFLNCTQSVYCSRNFQNRLFETLF*TCCQAVCCWPH 143
+GL R L S+ ++ L C+ + C R+ R+++ F CW H
Sbjct: 28 SGLKRVILCPSMELIAIL--TCSNHLICCRSNSQRIWDVDFHDLEATELCWNH 78
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 534 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPG 629
R R KL+++++K+ +DLC PG
Sbjct: 26 RSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPG 57
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 115 SLAWRELIINVANNTPLDNTFRTMFQKADFEN 210
+L W+E + NV+NNT L + +F N
Sbjct: 225 ALEWKEKVYNVSNNTLLSEAHYKLALALEFTN 256
>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 364 IQIKNKNT*AILTLVV*SLNRAGLLRAALILSLYI 260
+++ K T +LT ++ SL AG+L L+ SLY+
Sbjct: 155 LKLNGKETYTLLTKIL-SLGAAGMLEHVLLQSLYL 188
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1
Query: 55 ESIRWQILNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIV 234
ESI I ++ + E R I + N LDN F + + N+ P++
Sbjct: 771 ESISMAIKYREQEQSGLEFLVKGKRSKNIFLTNLVKLDNPFNSFGDEQLDYNYRKRIPMI 830
Query: 235 YNLKTK 252
Y+L+TK
Sbjct: 831 YDLRTK 836
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 225 TDCVQFKNKNLTMYNERIRAA--LNRPARFNDQTTNVNIAYVFLFFIC 362
TDC + KNK N+R ++ L+ P +F + + I + F F+C
Sbjct: 48 TDCPEIKNKKSRRKNQRNSSSIGLSNPNKF---SIYIYIYFFFYSFLC 92
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 ELIIN-VANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTK 252
+L+ N N PL+++ + D ++ + +TP+V+ + TK
Sbjct: 520 QLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPIDTK 561
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 259 VKFLFLNCTQ-SVYCSRNFQNRLFETLF*TCCQAVCCWPHL 140
V FLFLN + Y + +RLF T F CC+ + W L
Sbjct: 343 VIFLFLNVIGIAAYKLEDPVHRLFVTAFSVCCECL-AWTSL 382
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 609 PKTCQRVGKHETFCRFLIVFANI*VCAL 526
PK ++V H TF R I + VCA+
Sbjct: 1078 PKKARKVSGHTTFFRVGICLGKVLVCAV 1105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,079
Number of Sequences: 5004
Number of extensions: 53495
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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