Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120783.seq
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667...    32   0.45 
03_02_0094 - 5583932-5584036,5584137-5584200,5584305-5584387,558...    29   4.1  
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260...    28   5.5  
12_02_0189 + 15165485-15168694                                         28   7.2  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     28   7.2  

>06_03_1314 +
           29266320-29266346,29266463-29266556,29266663-29266712,
           29266798-29266847,29266945-29267053,29267135-29267195,
           29267291-29267343,29267629-29267721,29268091-29268166,
           29268401-29268508,29268596-29268840
          Length = 321

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 534 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPG 629
           R R   KLL+ID++F++   V   +DLC  PG
Sbjct: 22  RARSAFKLLQIDQEFNIFHGVKRVVDLCAAPG 53


>03_02_0094 -
           5583932-5584036,5584137-5584200,5584305-5584387,
           5584523-5584588,5584711-5584801,5585259-5585392,
           5586219-5586413,5586886-5587015,5587873-5587958
          Length = 317

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 474 VQQQVGGLRSLKLFDK-RPTRRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGRV 635
           V ++VG  +  ++F+    T   RC  K+L+  KK  + R +    +LCGGP  V
Sbjct: 36  VVRKVGRGKYSEVFEGINVTNDERCIIKILKPVKKKKIKREIKILQNLCGGPNIV 90


>05_07_0148 +
           28024820-28025293,28025655-28025702,28026034-28026080,
           28026334-28026496,28026595-28026656,28026820-28027003,
           28027093-28027182,28027553-28027686,28027747-28027936,
           28028103-28029033,28029860-28030065
          Length = 842

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 534 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPG 629
           R R   KLL++D +F         LDLC  PG
Sbjct: 23  RSRAAFKLLQLDARFRFLPTARAVLDLCAAPG 54


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 76   LNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFD 216
            LNG  ++      +L+WR+++  V NN   D   R  F   D  + D
Sbjct: 913  LNGCNLKYYESKLNLSWRKVLKEVMNNKESDENNRWEFLNPDASDSD 959


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 225  CIVVEIFKIGFLKHCSKRVVKRCVVGHIYNQFPP 124
            C   EI +  +L H SK  +  C   H++N  PP
Sbjct: 1022 CQKFEIERKSWLSHLSKLTIHDCPHLHVHNPLPP 1055


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,728,909
Number of Sequences: 37544
Number of extensions: 315131
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)