Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120783.seq
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                31   0.60 
SB_2029| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07)         27   9.8  
SB_27969| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_24685| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-06)                 27   9.8  
SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)                 27   9.8  
SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)                 27   9.8  
SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_50431| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6)                     27   9.8  
SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)                27   9.8  
SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.8  
SB_10823| Best HMM Match : 7tm_1 (HMM E-Value=6e-22)                   27   9.8  
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)                       27   9.8  

>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 231 CVQFKNKNLTMYNERIRAALNRPARFNDQTTNVNIAYVFLFFICIVLLNVLVV---FSDT 401
           C  + N     + +++ AA+    +     TNV++ Y F  F CI + N+ +      D 
Sbjct: 392 CYWYDNAFSVSFEQKVPAAVEIFLKAVWFVTNVHVLYAFASFWCIAMCNMYITGYSMIDY 451

Query: 402 NRTTDTKRKNVATKI 446
           + T  T  KN  T I
Sbjct: 452 HDTMSTHLKNKETPI 466


>SB_2029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 147 HIYNQFPPR*RTVLWRHFDFVAIQYLPSYRFPHIDNNSNMATKRFFLV 4
           H +N++P    T L + +D+ ++ +   Y F + D  + +  KR  L+
Sbjct: 189 HNFNKYPANLGTTLGKPYDYHSVMHYSRYAFSNDDEPTIVTKKRRVLI 236


>SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07)
          Length = 550

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 KNKNLTMYNERIRAALNRPARFNDQTTN 326
           K+K L  + E   + LNRP+  ND+  N
Sbjct: 455 KDKVLARWAEHFESVLNRPSAINDEAIN 482


>SB_27969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 KNKNLTMYNERIRAALNRPARFNDQTTN 326
           K+K L  + E   + LNRP+  ND+  N
Sbjct: 117 KDKVLARWAEHFESVLNRPSAINDEAIN 144


>SB_24685| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-06)
          Length = 311

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 3   AREKIFWSPYCCCCQYVGIYTMANTEWR 86
           A E I W  Y C C    IYT+ N E+R
Sbjct: 158 AFEVIKWLQYACSCINPIIYTVRNKEFR 185


>SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)
          Length = 855

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 KNKNLTMYNERIRAALNRPARFNDQTTN 326
           K+K L  + E   + LNRP+  ND+  N
Sbjct: 216 KDKVLARWAEHFESVLNRPSAINDEAIN 243


>SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)
          Length = 1092

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 KNKNLTMYNERIRAALNRPARFNDQTTN 326
           K+K L  + E   + LNRP+  ND+  N
Sbjct: 473 KDKVLARWAEHFESVLNRPSAINDEAIN 500


>SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1395

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 KNKNLTMYNERIRAALNRPARFNDQTTN 326
           K+K L  + E   + LNRP+  ND+  N
Sbjct: 513 KDKVLARWAEHFESVLNRPSAINDEAIN 540


>SB_50431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 635 NSPRSAAQIQKRVNVSANMKL 573
           N+PRS + IQ RV V  N+K+
Sbjct: 322 NNPRSTSSIQARVGVEINVKI 342


>SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6)
          Length = 358

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 KNKNLTMYNERIRAALNRPARFNDQTTN 326
           K+K L  + E   + LNRP+  ND+  N
Sbjct: 56  KDKVLARWAEHFESVLNRPSAINDEAIN 83


>SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
          Length = 1443

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243  KNKNLTMYNERIRAALNRPARFNDQTTN 326
            K+K L  + E   + LNRP+  ND+  N
Sbjct: 948  KDKVLARWAEHFESVLNRPSAINDEAIN 975


>SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 KNKNLTMYNERIRAALNRPARFNDQTTN 326
           K+K L  + E   + LNRP+  ND+  N
Sbjct: 244 KDKVLARWAEHFESVLNRPSAINDEVIN 271


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 117  VSVEGIDYKCGQQHTA*QHV*NNVSKSRF*KFRLQYTDCVQFKNKNLTMYNERI 278
            V+   +DY+   Q+T    V  N  ++ F +F +   D  +F +  L +++  +
Sbjct: 846  VTTRPLDYETRPQYTVVVRVRGNAERTSFREFTISVLDVTEFPDDYLVLHHSSV 899


>SB_10823| Best HMM Match : 7tm_1 (HMM E-Value=6e-22)
          Length = 451

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 3   AREKIFWSPYCCCCQYVGIYTMANTEWR 86
           A E I W  Y C C    IYT+ N E+R
Sbjct: 327 AFEVIKWLQYACSCINPIIYTVRNKEFR 354


>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1766

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 KNKNLTMYNERIRAALNRPARFNDQTTN 326
           K+K L  + E   + LNRP+  ND+  N
Sbjct: 378 KDKVLARWAEHFESVLNRPSAINDEAIN 405


>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
          Length = 259

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 519 KRPTRRPRCWRKLLEIDKKFHV 584
           K PT RPR WRK+L  D+ + +
Sbjct: 59  KPPTPRPRNWRKVLNDDQWYQL 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,314,437
Number of Sequences: 59808
Number of extensions: 424853
Number of successful extensions: 1275
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)