Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120783.seq
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36238-6|CAA85279.2|  337|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical ...    29   3.7  
U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    28   4.9  

>Z36238-6|CAA85279.2|  337|Caenorhabditis elegans Hypothetical
           protein R74.7 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 534 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPG 629
           R R   KL++ID +F + + V   +DLC  PG
Sbjct: 22  RARSAFKLMQIDDEFQILKGVRRAVDLCAAPG 53


>Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical
           protein C54E10.1 protein.
          Length = 872

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 507 KLFDKRPTRRPRCWRKLLEIDK--KFHVCRHV 596
           K+F KRP R   C  KLLE+ K  K H+ R +
Sbjct: 479 KIFIKRPERGDVCASKLLEVMKMEKLHILRSI 510


>AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical
           protein ZK250.2 protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 149 PTTHRLTTRLEQCFKKPILKISTTIHRLC 235
           PTTH  T   E+    P++++ST   ++C
Sbjct: 54  PTTHAETGMTEEMMTTPVVEVSTVTEKVC 82


>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 264 YNERIRAALNRPARFNDQTTNVNIAYVFLFFICIVLLNVLVVFSDTNRTTDTK 422
           YN  +  A++ P         +NI Y+F FF+ I+ L +L V    N+  +++
Sbjct: 169 YNSPVITAISPPKGVE---IRLNILYIFCFFLAILALILLQVVRFVNKRRESR 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,079,836
Number of Sequences: 27780
Number of extensions: 309578
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)