Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120783.seq
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    29   0.029
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    29   0.029
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   3.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.8  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 29.5 bits (63), Expect = 0.029
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +1

Query: 130 ELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNL 243
           ++I +++NNT  +N ++  +   ++ N +YN  + YN+
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNI 116


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 29.5 bits (63), Expect = 0.029
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +1

Query: 130 ELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNL 243
           ++I +++NNT  +N ++  +   ++ N +YN  + YN+
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNI 116


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 130 ELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNL 243
           ++I +++NNT  +N +     K ++ N +YN  + YN+
Sbjct: 80  KIISSLSNNTIHNNNY-----KYNYNNNNYNKKLYYNI 112


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 130 ELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNL 243
           ++I +++NNT  +N +     K ++ N +YN  + YN+
Sbjct: 80  KIISSLSNNTIHNNNY-----KYNYNNNNYNKKLYYNI 112


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 130 ELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNL 243
           ++I +++NNT  +N +     K ++ N +YN  + YN+
Sbjct: 80  KIISSLSNNTIHNNNY-----KYNYNNNNYNKKLYYNI 112


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 130 ELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNL 243
           ++I +++NNT  +N +     K ++ N +YN  + YN+
Sbjct: 80  KIISSLSNNTIHNNNY-----KYNYNNNNYNKKLYYNI 112


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 145 VANNTPLDNTFRTMFQKADFENFDYNTPIVYNL 243
           ++NN PL N +       ++   +YN  + YN+
Sbjct: 82  ISNNNPLSNNYNYNNNYNNYNKHNYN-KLYYNI 113


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 188 NIVLNVLSSG-VLLATFIINSLHANERCSGDTS-ISSPFSICHRI 60
           N++ N   +G  LLA +   +   NE CSG TS       +C R+
Sbjct: 89  NVITNKTGNGGPLLAPYPDWTWAKNENCSGITSAYKIEIDMCDRL 133


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -3

Query: 137 INSLHANERCSGDTSISSPFSICHRIDSHILTTTAIWRP 21
           +N+   N   +     SSP      +DS  + T A W P
Sbjct: 538 VNNNSGNGNTNSSARDSSPAIESISVDSGSINTVAEWEP 576


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 78  QYLPSYRFPHIDNNSN 31
           +YL S  F H D N+N
Sbjct: 235 EYLVSIMFSHYDRNNN 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,953
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)