Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120783.seq
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01230.2 68418.m00030 FtsJ-like methyltransferase family prot...    32   0.37 
At5g01230.1 68418.m00029 FtsJ-like methyltransferase family prot...    32   0.37 
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    31   0.86 
At2g23080.2 68415.m02751 casein kinase II alpha chain, putative ...    30   1.5  
At2g23080.1 68415.m02752 casein kinase II alpha chain, putative ...    30   1.5  
At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to D...    29   2.6  
At2g23070.1 68415.m02750 casein kinase II alpha chain, putative ...    28   6.1  

>At5g01230.2 68418.m00030 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 61

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 534 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPG 629
           R R   KLL+ID++F++   V   +DLC  PG
Sbjct: 22  RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPG 53


>At5g01230.1 68418.m00029 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 309

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 534 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPG 629
           R R   KLL+ID++F++   V   +DLC  PG
Sbjct: 22  RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPG 53


>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 534 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPG 629
           R R   KLL++D K+ +       LDLC  PG
Sbjct: 23  RSRASYKLLQLDAKYSLLHSAHAVLDLCAAPG 54


>At2g23080.2 68415.m02751 casein kinase II alpha chain, putative
           identical to probable casein kinase II, alpha chain
           [Arabidopsis thaliana] SWISS-PROT:O64817; similar to
           casein kinase II, alpha chain 1 [Arabidopsis thaliana]
           SWISS-PROT:Q08467
          Length = 307

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 474 VQQQVGGLRSLKLFD-KRPTRRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGRV 635
           V ++VG  +  ++F+ K      RC  K+L+  KK  + R +    +LCGGP  V
Sbjct: 36  VVRKVGRGKYSEVFEGKNVNTNERCVIKILKPVKKKKIKREIKILQNLCGGPNIV 90


>At2g23080.1 68415.m02752 casein kinase II alpha chain, putative
           identical to probable casein kinase II, alpha chain
           [Arabidopsis thaliana] SWISS-PROT:O64817; similar to
           casein kinase II, alpha chain 1 [Arabidopsis thaliana]
           SWISS-PROT:Q08467
          Length = 333

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 474 VQQQVGGLRSLKLFD-KRPTRRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGRV 635
           V ++VG  +  ++F+ K      RC  K+L+  KK  + R +    +LCGGP  V
Sbjct: 36  VVRKVGRGKYSEVFEGKNVNTNERCVIKILKPVKKKKIKREIKILQNLCGGPNIV 90


>At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to DNA
           binding protein GT-1 GI:598073 from [Arabidopsis
           thaliana]
          Length = 406

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 468 KHVQQQVGGLRSLKLFDKRPTRRPRCWRKLLEIDKKFHVCRHVD 599
           KH+ +Q+      K FD+ PT     WR LL   K+F   +H D
Sbjct: 113 KHLWEQISSKMREKGFDRSPTMCTDKWRNLL---KEFKKAKHHD 153


>At2g23070.1 68415.m02750 casein kinase II alpha chain, putative
           similar to casein kinase II, alpha chain (CK II) [Zea
           mays] SWISS-PROT:P28523; contains protein kinase domain,
           Pfam:PF00069
          Length = 432

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 474 VQQQVGGLRSLKLFDK-RPTRRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGRV 635
           V ++VG  +  ++F+    T   +C  K+L+  KK  + R +    +LCGGP  V
Sbjct: 134 VVRKVGRGKYSEVFEGIHATDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIV 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,697,571
Number of Sequences: 28952
Number of extensions: 265833
Number of successful extensions: 697
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)