Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120782.seq
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   1.3  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    26   4.0  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    25   9.3  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   9.3  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect(2) = 1.3
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 115 SEDENVLDFIIED 153
           SED+N+LDFI+ D
Sbjct: 624 SEDDNLLDFILRD 636



 Score = 21.0 bits (42), Expect(2) = 1.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 88  DIIVNAQINSEDEN 129
           ++IVN +I S DEN
Sbjct: 585 EVIVNGRIISHDEN 598


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 350 LVQLYFGAVKHYCVKIVFAVLHQIAQNTIVAADTAE*AFLYNN 222
           L  LYF A  +Y ++    VL     NTIV  ++AE   ++N+
Sbjct: 101 LRNLYFRADPNYNMRFTVPVLWDSKYNTIVNNESAEIIRMFND 143


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +1

Query: 67  NTSNITPDIIVNAQINSEDENVLDFIIEDEYYLKKRGVGAHIIKVASSPQLR 222
           N  ++   ++    +   + NV DF+   + YL+ +G+   + +V+S+P +R
Sbjct: 60  NLISLHKSLVEIESLGGNEVNVSDFL---KSYLESKGLTVELQRVSSNPTVR 108


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 498 QKEKPTLLEFDFEENIDDGDVSAPKKQK 581
           +K+K +  + D  E +DDGD+ + +K K
Sbjct: 151 KKKKKSKSKDDGSEALDDGDIESSEKDK 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,103
Number of Sequences: 5004
Number of extensions: 35373
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)