Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120782.seq
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0644 + 18337757-18337947,18339113-18339344                       29   4.1  
11_01_0544 + 4306436-4306762                                           28   5.5  

>04_03_0644 + 18337757-18337947,18339113-18339344
          Length = 140

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 508 NRRCWNSISKKIST-TETFQRLRNKNLTTLN 597
           NR     I + + T TE FQR+ N NLTT+N
Sbjct: 29  NRDMTVVIERMVQTSTERFQRMLNANLTTIN 59


>11_01_0544 + 4306436-4306762
          Length = 108

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +1

Query: 199 VASSPQLRLLYKNAYSA---VSAATIVFCAIWCK 291
           VASSPQ +  Y N YS    VSA     CAI C+
Sbjct: 43  VASSPQYQPSYGNTYSTCFEVSACDDTGCAIRCR 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,807,329
Number of Sequences: 37544
Number of extensions: 205387
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)