Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120782.seq
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 30   1.8  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            27   9.8  

>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 178 VGAHIIKVASSPQLRLLYKNAYSAVSAATIVFCAIWCKTANTILT 312
           +G+  IKV + PQ  +  +N+ + ++  T + CA+      T++T
Sbjct: 527 IGSFEIKVGAPPQFTMTPRNSNATLNRTTQLHCAVASANLRTVIT 571


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 27  QIN*SKRYYKKNGKHEQHYARHHCERPNQQ 116
           Q+   K   KK G+  + YAR  C R  Q+
Sbjct: 278 QVQQLKEELKKQGERHEQYARESCNRAGQE 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,652
Number of Sequences: 59808
Number of extensions: 258259
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)