Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120780.seq
(555 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P17500 Cluster: Major capsid protein; n=15; Nucleopolyh... 101 9e-21
UniRef50_Q0N423 Cluster: VP39; n=1; Clanis bilineata nucleopolyh... 82 1e-14
UniRef50_Q8QLD5 Cluster: Vp39 capsid; n=1; Mamestra configurata ... 77 4e-13
UniRef50_P35840 Cluster: Major capsid protein; n=12; Nucleopolyh... 75 1e-12
UniRef50_Q80LM9 Cluster: Major capsid protein VP39; n=1; Adoxoph... 74 3e-12
UniRef50_Q9DWZ8 Cluster: VP39; n=2; Nucleopolyhedrovirus|Rep: VP... 51 2e-05
UniRef50_Q7T9T4 Cluster: Vp39-capsid; n=5; Granulovirus|Rep: Vp3... 46 6e-04
UniRef50_Q9DVV4 Cluster: PxORF79 peptide; n=1; Plutella xylostel... 44 0.002
UniRef50_Q8JRX1 Cluster: Capsid protein VP39; n=1; Phthorimaea o... 43 0.004
UniRef50_Q6QXM6 Cluster: ORF086; n=1; Agrotis segetum granulovir... 42 0.010
UniRef50_Q9PYT2 Cluster: ORF111; n=4; Granulovirus|Rep: ORF111 -... 41 0.017
UniRef50_Q0ZNY8 Cluster: Major viral capsid protein 39; n=3; Nuc... 41 0.022
UniRef50_Q752F9 Cluster: AFR617Cp; n=1; Eremothecium gossypii|Re... 32 7.8
>UniRef50_P17500 Cluster: Major capsid protein; n=15;
Nucleopolyhedrovirus|Rep: Major capsid protein - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 351
Score = 101 bits (243), Expect = 9e-21
Identities = 47/79 (59%), Positives = 58/79 (73%)
Frame = +3
Query: 18 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSQCSPDAYHXDGWFICNSHLIKRXKMS 197
MAL+ G++ R+ N CIF +I FD+C+TY+S CS DA DGWFIC+ HL R KMS
Sbjct: 1 MALVSPGVSSRRS-TNHCIFGAIEPFDSCVTYRSPCSSDASVDDGWFICDYHLKLRFKMS 59
Query: 198 KMVLPIFDEDDNQFXMTIA 254
KMVLPI+DEDDNQ+ TIA
Sbjct: 60 KMVLPIYDEDDNQYKRTIA 78
Score = 65.3 bits (152), Expect = 9e-10
Identities = 30/55 (54%), Positives = 36/55 (65%)
Frame = +2
Query: 257 HXVXNXERGIKRXLIPSATNYQEXFNLNSMMQAEQXIFHLIYNNEEAXNVICDNL 421
H V + ERG+KR L+P+ NY FNL MM AEQ IFHLIY+N N IC +L
Sbjct: 80 HLVGHKERGVKRILVPTRANYMTVFNLPGMMLAEQLIFHLIYDNRLEVNRICASL 134
>UniRef50_Q0N423 Cluster: VP39; n=1; Clanis bilineata
nucleopolyhedrosis virus|Rep: VP39 - Clanis bilineata
nucleopolyhedrosis virus
Length = 350
Score = 81.8 bits (193), Expect = 1e-14
Identities = 41/79 (51%), Positives = 49/79 (62%)
Frame = +3
Query: 18 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSQCSPDAYHXDGWFICNSHLIKRXKMS 197
MAL+ GMA ++ N CIF S+ FDAC Y+S CS DA + DGW IC+ HL R KM
Sbjct: 1 MALVVSGMATGRIN-NYCIFGSVQPFDACGPYRSPCSDDAKNNDGWLICDYHLSTRFKME 59
Query: 198 KMVLPIFDEDDNQFXMTIA 254
KMVLPI D D T+A
Sbjct: 60 KMVLPIPDADGTALNRTLA 78
Score = 44.0 bits (99), Expect = 0.002
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +2
Query: 281 GIKRXLIPSATNYQEXFNLNSMMQAEQXIFHLIYNNEEAXNVICDNL 421
G +R L+P+ NY N+ ++ AEQ IFH+IY N+ IC L
Sbjct: 88 GDERILVPTKRNYMSVLNILALQLAEQYIFHIIYENDVERERICQML 134
>UniRef50_Q8QLD5 Cluster: Vp39 capsid; n=1; Mamestra configurata
NPV-A|Rep: Vp39 capsid - Mamestra configurata NPV-A
Length = 325
Score = 76.6 bits (180), Expect = 4e-13
Identities = 38/78 (48%), Positives = 45/78 (57%)
Frame = +3
Query: 18 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSQCSPDAYHXDGWFICNSHLIKRXKMS 197
MAL P G Q + N CIF +I FD C TY S CS DA DGWFIC HL R +M
Sbjct: 1 MALTPYGS--NQPQSNNCIFGAIRPFDTCRTYSSPCSNDASQEDGWFICEYHLSIRFRME 58
Query: 198 KMVLPIFDEDDNQFXMTI 251
KMVLPI D + + ++
Sbjct: 59 KMVLPIPDAEGTIYNRSV 76
Score = 47.2 bits (107), Expect = 3e-04
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +2
Query: 290 RXLIPSATNYQEXFNLNSMMQAEQXIFHLIYNNEEAXNVICDNL*Y 427
R LIP+ TNY++ L SM EQ IFH+IY+ + N IC L Y
Sbjct: 88 RVLIPTKTNYEDVLKLPSMSLPEQLIFHMIYDEPDKQNEICKLLQY 133
>UniRef50_P35840 Cluster: Major capsid protein; n=12;
Nucleopolyhedrovirus|Rep: Major capsid protein -
Lymantria dispar multicapsid nuclear polyhedrosis virus
(LdMNPV)
Length = 356
Score = 74.9 bits (176), Expect = 1e-12
Identities = 34/78 (43%), Positives = 49/78 (62%)
Frame = +3
Query: 18 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSQCSPDAYHXDGWFICNSHLIKRXKMS 197
MAL+ ++ ++R N C+F ++ FD C Y S CSPD+ + DGWFIC+ H R K+
Sbjct: 1 MALVSGALSTNRLR-NYCVFGAVQPFDNCRAYGSPCSPDSTNNDGWFICDYHSSIRFKIE 59
Query: 198 KMVLPIFDEDDNQFXMTI 251
KMVLPI D + N + T+
Sbjct: 60 KMVLPIPDAEGNIYNRTV 77
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/47 (48%), Positives = 29/47 (61%)
Frame = +2
Query: 281 GIKRXLIPSATNYQEXFNLNSMMQAEQXIFHLIYNNEEAXNVICDNL 421
G R LIP+ NY+ NLNSM AEQ + H+IY+N EA +C L
Sbjct: 88 GAARVLIPTRDNYKTVLNLNSMSLAEQLVTHMIYDNVEAQGAVCKAL 134
>UniRef50_Q80LM9 Cluster: Major capsid protein VP39; n=1; Adoxophyes
honmai NPV|Rep: Major capsid protein VP39 - Adoxophyes
honmai nucleopolyhedrovirus
Length = 312
Score = 73.7 bits (173), Expect = 3e-12
Identities = 35/78 (44%), Positives = 44/78 (56%)
Frame = +3
Query: 18 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSQCSPDAYHXDGWFICNSHLIKRXKMS 197
MAL+P G+ + N CIFA + SFDAC Y ++CS DA DGW+IC H KM
Sbjct: 1 MALVPAGLTSSRSNSN-CIFAGVQSFDACYRYPNECSKDADSNDGWYICEYHASVHFKME 59
Query: 198 KMVLPIFDEDDNQFXMTI 251
KM L I D D+ T+
Sbjct: 60 KMSLAIPDADNKVLFRTV 77
Score = 47.6 bits (108), Expect = 2e-04
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +2
Query: 263 VXNXERGIKRXLIPSATNYQEXFNLNSMMQAEQXIFHLIYNNEEAXNVICDNL*YT 430
V + E G R L+P+ NY+ N+ + AE I H+IY N E IC+ L +T
Sbjct: 82 VKHTEEGTARILVPNKNNYESVLNVQDLPLAEALIIHMIYENLEKQKEICERLKFT 137
>UniRef50_Q9DWZ8 Cluster: VP39; n=2; Nucleopolyhedrovirus|Rep: VP39
- Spodoptera litura multicapsid nucleopolyhedrovirus
(SpltMNPV)
Length = 302
Score = 51.2 bits (117), Expect = 2e-05
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 18 MALMPVGMAPRQMRVNRCIFASI--VSFDACITYKSQCSPDAYHXDGWFICNSHLIKRXK 191
MAL+ G A +M+ N CIF + + F+ C Y+S CS DA DG F+C HL + K
Sbjct: 1 MALVSGGNANSRMK-NYCIFQGVRPIEFNQCSNYRSPCSDDASQNDGVFMCQYHLSRFFK 59
Query: 192 MSKMVLPIFD 221
+ K + I D
Sbjct: 60 IEKTSIAIPD 69
Score = 46.8 bits (106), Expect = 3e-04
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 263 VXNXERGIKRXLIPSATNYQEXFNLNSMMQAEQXIFHLIYNNEEAXNVICDNL 421
V + R R LIP+ NYQ N++ + AE+ + HLIYNN A IC+ L
Sbjct: 84 VSHNARANDRILIPTQENYQAVMNVSMLPPAERLVLHLIYNNRTAAAEICNQL 136
>UniRef50_Q7T9T4 Cluster: Vp39-capsid; n=5; Granulovirus|Rep:
Vp39-capsid - Adoxophyes orana granulovirus (AoGV)
Length = 291
Score = 46.0 bits (104), Expect = 6e-04
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +3
Query: 33 VGMAPRQMRVNRCIFASIVS----FDACITYKSQCSPDAYHX--DGWFICNSHLIKRXKM 194
+ + P ++ N CIF +V + C Y S CSPDA + DG FICN HL K K+
Sbjct: 4 INVGPCELN-NYCIFQGVVGMMPDYYRCENYSSPCSPDASNSNLDGTFICNYHLNKYFKI 62
Query: 195 SKMVLPIFDEDDNQFXMTIAG 257
K I DN+ + G
Sbjct: 63 LKSSFRIPSGKDNKSFKMLVG 83
>UniRef50_Q9DVV4 Cluster: PxORF79 peptide; n=1; Plutella xylostella
granulovirus|Rep: PxORF79 peptide - Plutella xylostella
granulovirus
Length = 320
Score = 44.4 bits (100), Expect = 0.002
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 39 MAPRQMRV-NRCIFASIVSFDA--CITYKSQCSPDAYHXDGWFICNSHLIKRXKMSKMVL 209
M+ RQ RV N CIF ++ ++ C CS DA + DG FICN HL + KM L
Sbjct: 2 MSLRQNRVYNNCIFQAVSYSNSSLCADPVLHCSKDASNDDGTFICNHHLSMYFPLEKMTL 61
Query: 210 PIFDEDDNQFXMTI 251
I F + I
Sbjct: 62 EIPSGTGTSFKLLI 75
>UniRef50_Q8JRX1 Cluster: Capsid protein VP39; n=1; Phthorimaea
operculella granulovirus|Rep: Capsid protein VP39 -
Phthorimaea operculella granulovirus
Length = 293
Score = 43.2 bits (97), Expect = 0.004
Identities = 29/68 (42%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +3
Query: 63 NRCIFASI-VSFDACITYKSQCSPDAYHX--DGWFICNSHLIK--RXKMSKMVLPIFDED 227
N CIF + FD C Y QCS DA + DG FICN HL K R SK +P D
Sbjct: 13 NYCIFQGVNYQFD-CDGYTRQCSEDARYSQLDGTFICNFHLGKYFRILKSKFEIPSGGVD 71
Query: 228 DNQFXMTI 251
+ F M +
Sbjct: 72 NRSFKMLV 79
>UniRef50_Q6QXM6 Cluster: ORF086; n=1; Agrotis segetum
granulovirus|Rep: ORF086 - Agrotis segetum granulosis
virus (AsGV) (Agrotis segetumgranulovirus)
Length = 292
Score = 41.9 bits (94), Expect = 0.010
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 63 NRCIFASIV--SFDACITYKSQCSPDAYHXDGWFICNSHLIKRXKMSKMVLPIFDEDDNQ 236
N CIF + F C Y+ C Y+ DG FIC HL K KM KMV+ I +
Sbjct: 12 NLCIFQGVQPPEFLNCRPYEPPCI-QPYNDDGTFICQYHLAKYFKMEKMVVRIGSGVGPE 70
Query: 237 FXMTI 251
F M I
Sbjct: 71 FDMLI 75
>UniRef50_Q9PYT2 Cluster: ORF111; n=4; Granulovirus|Rep: ORF111 -
Xestia c-nigrum granulosis virus (XnGV) (Xestia
c-nigrumgranulovirus)
Length = 329
Score = 41.1 bits (92), Expect = 0.017
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 63 NRCIFASIV--SFDACITYKSQCSPDAYHXDGWFICNSHLIKRXKMSKMVLPIFDEDDNQ 236
N CIF + F C Y CS D + DG F+C+ HL + K+ K V I +N
Sbjct: 16 NLCIFQGVQPPEFMNCGIYTPPCSDDCVNKDGTFVCSYHLARYFKLKKEVFEIPSGVNNT 75
Query: 237 FXMTIAGI 260
+ G+
Sbjct: 76 SFKYLVGV 83
>UniRef50_Q0ZNY8 Cluster: Major viral capsid protein 39; n=3;
Nucleopolyhedrovirus|Rep: Major viral capsid protein 39
- Neodiprion abietis nucleopolyhedrovirus
Length = 315
Score = 40.7 bits (91), Expect = 0.022
Identities = 15/48 (31%), Positives = 30/48 (62%)
Frame = +2
Query: 290 RXLIPSATNYQEXFNLNSMMQAEQXIFHLIYNNEEAXNVICDNL*YTG 433
R ++P+ NY++ F + + + Q +FHL+Y N+ A + IC ++ +G
Sbjct: 104 RVIVPTRRNYEDIFKVAYLPISYQLVFHLLYQNQSAIDKICQDVKISG 151
>UniRef50_Q752F9 Cluster: AFR617Cp; n=1; Eremothecium gossypii|Rep:
AFR617Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 771
Score = 32.3 bits (70), Expect = 7.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 63 NRCIFASIVSFDACITYKSQCSPDAYHXDGWFICN--SHLIKRXKMSKMVLPIFDEDDN 233
N+C I A I + SP + D IC+ S LIKR SK+ + + DE ++
Sbjct: 22 NQCFHNGIAKLSAVIDKYLEKSPPDFTLDDCLICSKASELIKRLATSKVHIDVIDETNS 80
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,837,913
Number of Sequences: 1657284
Number of extensions: 7139566
Number of successful extensions: 13516
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13514
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36655321736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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